Detailed information on CNT30521637


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT000851, E-value = 2e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677056Setaria italicaSetaria viridis58.8625.2193.65299forward
CNT30617447Setaria italicaSesamum indicum51.9744.5993.94264reverse complement
CNT30712450Setaria italicaGlycine max33.2759.5191.72169forward
CNT30627950Setaria italicaDaucus carota57.4867.9194.86292forward
CNT30705531Setaria italicaPrunus avium43.979.6493.27223reverse complement

Expression of CNT30521637

Peptides detected in this lncRNA

>peptide 1 (47 aa)
AVHRGFGRRLPCHQFTNFLDLPAPNCNTESSPKISVGVDEAEARMSA*

>peptide 2 (48 aa)
PFTGASVAGFPVISSPTSLTFRHQIVIQNRLQRFRSGSTKRKRECRLE*

Sequence

>CNT30521637
CGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCAACTTCCTTGACCTTCCGGCACCAAATTGTAATACAGAATCGTCTCCAAAG
ATTTCGGTCGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCCAAAAACCCAAGGTTTCCTCCGC
AAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGGTAC
GGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATAGGTTTAAGGACACAAGGTGACCCTGCTTTTTCAGGGTAAGAAGGGGTAGAGAAAATGCC
TCGAGCCGCCTCACGGTATCCAAGTTGAAAGGGATAAGTTGAACAAGTATGGTCGTCCTTTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCGC
AAAAAATT