« Back to Setaria italica search


Detailed information on CNT30521466


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 3e-102

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674260Setaria italicaSetaria viridis84.8497.4499.47571forward

Expression of CNT30521466

Peptides detected in this lncRNA

>peptide 1 (33 aa)
KIKPSSLIHCSNQTVVLKYFLRNIIRGFITVET*

>peptide 2 (43 aa)
QDKTKFTNPLQQSNCCTQILFAKHHTGLYHSRNLRQTQTSDTQ*

>peptide 3 (53 aa)
MPSLSWIFAFTLSMVSEDSTSRVMVFPVRVFTKICMPPRRRSTKWRVDSFWML*

Sequence

>CNT30521466
CCAAGATAAAACCAAGTTCACTAATCCATTGCAGCAATCAAACTGTTGTACTCAAATACTTTTTGCGAAACATCATACGGGGCTTTATCACAGTAGAAAC
TTAAGACAGACTCAAACTTCAGACACACAGTAGAAACTTAGACAGACTCAACTTCAGAGACACATCAGACAGACAAATTGAACTTGGTACGCCAGCCCAC
CTCGGACCTTCACTGGCCACCTCGGAGGCGCAGAACCAGGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGGCCGTCCTCAAGCTGC
TTACCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCGGAAGACTCGACCTCCA
GGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATGCCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAGTC
AGCAAGTGTGCGCCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTG
TCAATTGTATCCGAGGATTCAACCTCGAGGGTGATGGTCTTGCCTGTGAGTGTCTTCACAAATATCTGCATCT