Detailed information on CNT30521394


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673967Setaria italicaSetaria viridis12.381.47100444forward
CNT30193220Setaria italicaSecale cereale7.0928.8990.62256forward
CNT30474298Setaria italicaSaccharum spontaneum8.4539.4188.85305forward
CNT30140847Setaria italicaLolium perenne6.943.6886.75249forward
CNT3016300Setaria italicaZea mays10.2859.9487.06371forward
CNT30368633Setaria italicaSorghum bicolor14.898.8985.58534forward
CNT30369646Setaria italicaOryza glumipatula7.0948.1280.08256forward
CNT30497176Setaria italicaDigitaria exilis8.3730.0590.73302forward
CNT30115905Setaria italicaOryza nivara7.0947.8580.47256forward
CNT30557292Setaria italicaPanicum hallii8.0937.4486.99292forward

Expression of CNT30521394

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MNMDEKVYRLNNWTKISTHLYEICVRILNK*

>peptide 2 (29 aa)
MLVPLQHSAASEAEHPSQCSACRRRCPSW*

>peptide 3 (35 aa)
MGSHSSASHAWEKCQNGLSGTLAWHLYDATEQEQE*

>peptide 4 (30 aa)
MNESQGVNHKETHPHAGAFTALCSERSRAP*

>peptide 5 (38 aa)
MLTYEEFLGPLTYTCHAECHELTSPHIVFYTIFIGRRI*

>peptide 6 (35 aa)
MSSFTMESPNVETCRMKSSRLPSAMVLSPQSHRDL*

>peptide 7 (98 aa)
MVGSPLAKTISSRSRVTLKNGHSLYISLSIWKFLISFFMACLGETGGCMPCSSVAAVKRCSVRKQRCSSPKEVSMTSPCTVTRRDPLMVSGGWDRMAR*

>peptide 8 (59 aa)
MPAAMPFMVRMSVSSSPGPYSLAGLSFTIPRGWFSSANSLDSGGCGVTLKFGSLILFRV*

>peptide 9 (82 aa)
MLNVMSSQVHILCSILSLSEEEFNDKKRWAVTLQPHMHGRNVRMACLVPWHGTCMMQPSKNKSEKEGLNGDNNTAVISIAIT*

>peptide 10 (46 aa)
MFVRLSMFEKELATTMASLGDSLVSLDPSSLSFAASRSRSYSAATS*

>peptide 11 (56 aa)
MMYGPKLSRGSSARTWKHPSTSAISSVWGMSLLSSGRLPRSSESSHSWRFSSDHSR*

>peptide 12 (39 aa)
MDKLLCFHVVVPELLPEWLEFVGDEQLVVEAGDGGVSLG*

>peptide 13 (40 aa)
LWSLYYYRITECLNSQEVPLDLYIKPYSKRKHERKPRCES*

Sequence

>CNT30521394
GTTTGTGGTCTTTATATTATTACAGAATTACAGAATGCTTAAACAGCCAAGAAGTTCCACTTGATCTTTACATCAAGCCTTATTCGAAAAGAAAACATGA
ACGAAAGCCAAGGTGTGAATCATAAAGAAACACATCCACATGCTGGTGCCTTTACAGCACTCTGCAGCGAGCGAAGCAGAGCACCCTAGCCAGTGTTCTG
CATGCCGGCGGCGATGCCCTTCATGGTGAGGATGAGCGTGTCCTCCAGCCCCGGCCCGTACTCGCTCGCCGGGTTGAGCTTCACAATCCCGCGCGGCTGG
TTCTCGTCGGCGAACTCCTTGGACAGCGGCGGCTGCGGCGTCACCTTGAAGTTCGGGTCCCTTATCCTCTTCAGGGTGTAGGCCTGCCACACGTTAAGAA
TGGTGATGTAGGGGTCGCGCAGCCGCAGCTGCTGCTTCAGGCCGGGATCGCTTTCAAGGATTTCCTTGTGCCCAGCAACCTGCACAAAGATGGATAAGCT
TCTCTGTTTCCACGTAGTTGTTCCTGAGCTGCTCCCCGAATGGCTTGAGTTCGTCGGCGACGAGCAGCTGGTCGTAGAGGCCGGCGATGGTGGGGTCTCC
CTTGGCTAAGACCATCTCGAGCAGGTCCAGGGTGACCCTGAAGAATGGCCACTCGTTGTACATCTCCTTGAGCATCTGGAAGTTCTTGATATCCTTCTTC
ATGGCGTGCTTGGGGGAGACCGGCGGGTGCATGCCGTGCTCGAGCGTGGCGGCGGTGAAGCGCTGCAGCGTCCGGAAGCAGAGGTGCTCTTCGCCGAAGG
AGGTTTCGATGACCTCGCCCTGCACCGTCACACGGAGGGACCCGTTGATGGTGTCCGGCGGCTGGGACAGGATGGCGAGATGATGTACGGGCCGAAGCTG
TCGCGGGGCAGCTCGGCGAGGACGTGGAAACATCCGAGCACGTCGGCGATCTCCTCGGTCTGGGGCATGTCCTTGCTCAGCAGTGGCCGCTTGCCGCGGA
GCTCGGAGAGCAGCCACTCCTGGCGCTTCTCCTCGGACCACTCGCGGTAGGACCCGATGCCGAGGTGCGTGGTGATCGCGTCGATCACGTCGGTGTGACG
CTCCGACTCCTGACGGATGTCCAGCTTCACCATGGAGAGCCCGAACGTCGAGACCTGCCGCATGAAGTCGAGCAGGCTCCCGTCGGCGATGGTCTTGTCA
CCACAGTCACACAGGGATTTGTAGCACAGCTCAAGGGGCTCCAGGAACTGACCAAATTTGAAGGGTTCCACAGTAATTCGACATCATGCTCCTTTGTGAT
TTAAGTGTTCCATAAATAAATTTTCTTTGGAAGCTTCTCATCATAGTATGATCATCTTACCATTACTAATTGAAAGCTCCTTTTGAGGCCTTCACATGAA
GCCACCTAGGATCCTAGGTGGACACTCTAGAAAAATACAGAAATTCTAGAAATTCTATCAAAAAAGAAAAATATCTAGCCATCAATTAGGTAGACTCAAA
TTATCATAGACATTAAATCTATTATATTTTCTAAAAATTACCCACCCTAACATTATAAAAATGTCTAAAGAAACCCCCTAAATCTATATCTAAATTACTC
ACCACTACCATTTTATAAAATAAACTAAATTACCCCTAATCTTCATCTAAATTTTCCACTTATGCTATTATAATTTTTTAAAATAATTCCATAAATTTGC
ATTTAAATTGCCCACCACTAACAATATAAATTAAAATTAAAATTAAAGTAACCCCTTAAATTCGCATCTATATTACCCACATATCCCATTATCGAAAATA
ACATGAGGTAAACCTAAATCTAAATTCAAATTATATCCATTAAAATATATCCTCACGGTACACCAATATATGATTCTAAATTATCTATTTCTTACATTGT
TTATATAGAAAATAATAATTAAGGTATATACGCACATGATGTGTATCGCTGTTTATAAATATATAGAGGATGTGTGTCGCCATTTAAAATATATTTCCAT
GTTAAAAATATAGATCAAACTTAGGGTCTATTAAACAAATTCAAGCATATACCTACAATGCAAAGTGAAAAATAAAGATTATAATGTGGATGAAAGCTTT
ATAGAGTAATCACTAACTAAAGTCTACCATAATCGGATGAACATAATAAGTACATACCTATATAAGTATTGTATTAGAATATTTAATAAACTAGAAAGCG
CTTAAGGTAACAATTTTGATTGTTAGCTATGTGCCCTTATTCTTTAATTGGAGACTTCGTATCAATTCTCATGACACGCACTAGCAAAAAAAGATAAATC
CTACAAATTCTCACATAAAAGTGAAACATTTAGGCATCAATCGTGTAGACTCTAATAATCATAGTCATTGGTCTATTATATTTTCTACAAAATTATCCAA
CACTATAATTATGAAAATATTGTCCAAATTCTCCCTAAACCTATATCTAAATTATCCATCTCTACCATTATAAAAAAATAATCCAATGTAACCCCATAAT
CTTCGTCGAATTATCCATTCATGTTATTGTGAGAAATAACTTAAAATATCTTCTCAATTTGTATTTAAATTAACACATACGTGGTTATTAAAAATAACCT
AAAGTAAGTACCTAAATCTACAGAAATATCCAAAATAAAAAAAATATGATTCTAAATTACCTATTCTACCATTATTAATATAGAAATACTAAGTTAAGGT
ATATATGCATGATGGGTGTCACCACATGTAGGCGATTTATAATTGTATCAATGTATGGGAGGAAGAGATGAAAAATATTGATTTTCATGTTAAACACAAT
GTATGGAGGTGCGATGCAAAGTGAAAAGGTATGAACATGGATGAAAAAGTGTATAGATTAAATAACTGGACAAAGATAAGTACACATCTATATGAAATTT
GTGTTAGAATATTAAATAAATGAGTGTGTCCTAGCTAAATAATTTTGATTATTAGATAGAGGGTCTAGTTTTTAAATAGTTTTCTAATACAATGGCTCTT
AAAAATGTTGACGTACGAAGAATTTTTGGGCCCACTAACTTACACGTGTCATGCTGAATGTCATGAGCTCACAAGTCCACATATTGTGTTCTATACTATC
TTTATCGGAAGAAGAATTTAACGACAAAAAGAGATGGGCAGTCACTCTTCAGCCTCACATGCATGGGAGAAATGTCAGAATGGCCTGTCTGGTACCCTGG
CATGGCACTTGTATGATGCAACCGAGCAAGAACAAGAGTGAAAAGGAGGGCCTTAATGGTGATAACAACACTGCCGTAATATCGATTGCAATAACATGAT
CGTTTTCTTGGAATTCATTAGGTAAACAAAGTCAGAGCCTCAAATTTGCAGGAATTATCTTGATTCACTATGCAAAAGTTTTGATGTTCACTAGTGTTGA
AATGTAAGTACCTCCCTCTGCAGAGCCTCGTCGAGCTCCTGCTTATCGTCCTCCGTGATGTTTGTTAGGTTGAGCATGTTCGAGAAGGAGCTCGCCACGA
CGATGGCGTCATTGGGGGACAGCTTGGTGAGCCTGGACCCGAGCTCGCTCAGCTTCGCGGCGTCGCGATCGCGCTCGTACTCCGCCGCCACCTCGTAGCA
CTCCTGGAC