Detailed information on CNT30521356


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XA40|RGA3_SOLBU, E-value = 3e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553729Setaria italicaOryza glaberrima66.2264.484.67398forward
CNT30344971Setaria italicaEragrostis tef29.627.0884.83178forward
CNT30104896Setaria italicaOryza longistaminata36.9429.3785.59222forward
CNT30101614Setaria italicaOryza rufipogon47.4229.1785.96285forward
CNT30576379Setaria italicaOryza barthii26.1247.4386.62157forward

Expression of CNT30521356

Peptides detected in this lncRNA

>peptide 1 (39 aa)
SSLMHSSTETDWARSCMASCITYPSLWCWKKDLFTNSSK*

>peptide 2 (54 aa)
PALCIRQQRQTGLGHAWHHASHIHLCGVGRRTCLLIHQNSYSQYLPSFYFLEAE*

>peptide 3 (36 aa)
MPLPIISNSGCALASPSTNAWFLNNCQQSLSDNCFR*

>peptide 4 (33 aa)
MLVAGLSTSSQCPCLLFPILGVHWRHRQQMHGS*

Sequence

>CNT30521356
ATCCAGCCTTATGCATTCGTCAACAGAGACAGACTGGGCTAGGTCATGCATGGCATCATGCATCACATATCCATCTTTGTGGTGTTGGAAGAAGGACCTG
TTTACTAATTCATCAAAATAGCTACTCCCAATATCTTCCATCCTTCTACTTCCTTGAGGCTGAATGAACCCAAGGGCCATCCAGATCTGAACCAATCTCC
CTTTCTCAAACATATAATCTTTGGGGAAGACTGAACAAAATGCAAAACATTGCTTCAGTATGGCAGGCAAATGACTGTAACTCAATCTGAGAGCTGGCAG
TATATTGTTCTTATCTGATGCTAGTGGCAGGCCTTTCAACTTCTTCACAATGCCCTTGCCTATTATTTCCAATTCTGGGTGTGCACTGGCGTCACCGTCA
ACAAATGCATGGTTCTTGAACAACTGCCAGCAATCATTGTCTGATAACTGCTTTAGATGATAAGGAGTCATCCCGCCCATTAGTTTCCCCACATGGTTGT
TTCGTGTTGTAACTACAATCCTGCTTCCCTTTTCCCCAGTAAGTAGAGCACAGCGATACCTGTCCCATTTTAAAGGATCCTCATTCCACACATCATCAAG
G