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Detailed information on CNT30521311


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XKF3|PORA_ORYSJ, E-value = 2e-126

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693116Setaria italicaOryza sativa32.5249.0589.92387forward
CNT30701275Setaria italicaQuercus lobata10.2521.1482.79122forward
CNT30553602Setaria italicaOryza glaberrima28.6673.4989.15341forward
CNT30658921Setaria italicaTriticum dicoccoides16.2228.4289.12193forward
CNT30345769Setaria italicaEragrostis tef16.0532.7187.43191forward
CNT30101305Setaria italicaOryza rufipogon23.2858.6990.97277forward
CNT30575951Setaria italicaOryza barthii27.0674.1989.75322forward

Expression of CNT30521311

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MPAPLAALAVLRKSRQAMTTCHLPVSASALAAARPSPDDAPVITTTPWRSVFLPSLVAVLAPGVATGAVATACALTESDGTC

>peptide 2 (71 aa)
MVTNGTNQTMKQKLLCSTETRASTVLARSSKLESASNLRASSPSPGRWPPARAGSRTTPSPCSSSSTPPTW*

>peptide 3 (70 aa)
MVSMLQILLSLYALAPSKLSEPSIMADPFWPRRPPASPRRSPSPALGGMFPASVLVLPVMEPRMMRRRDG*

Sequence

>CNT30521311
CGGGTTGAAAAAAAAAACAAATTGTACATGTGCATGACCATCGATCGGTTACAGGCTTATCTGACTGTCATCACCAGCTCCTAAAAACAAAATGGTTACT
AATGGTACAAATCAAACAATGAAGCAAAAGCTCCTCTGCTCGACGGAGACACGAGCGTCCACCGTATTGGCACGCTCCTCCAAGCTAGAAAGTGCCAGCA
ATCTCAGAGCTTCCTCGCCTTCTCCGGGTCGCTGGCCTCCTGCGAGAGCTGGTTCTCGAACGACGCCGAGTCCTTGTTCCAGCTCCAGTACACCCCCGAC
TTGGTGAGGCTGGGGTCGCTGACCACCTGCGCCAGCCTCTTGCCGGACTCCGCCTCCGAGACGAACCCCTTGGTGATGAACTTCTGGAACGGCGGGAAGA
GCAGGCGGAAGAGCGGGATGTGCTCGCGGAACAGCCCCGTGGTGGCGATGCACCCCGGGTAGAGCGACGCGAAGGTGATACCCGTCTCCTCGTGGTAGCG
GCGGTGGAGCTCCTGCATGGTGAGCATGTTGCAGATCTTGCTGTCCTTGTACGCCTTGGCGCCGTCGAAGCTCTCGGAGCCGTCGATCATGGCGGACCCG
TTCTGGCCGCGCAGGCCGCCGGCGAGCCCCCGGAGGTCGCCCAGCCCAGCCTTGGGCGGGATGTTCCCGGCCAGCGTGTTGGTGTTGCCGGTGATGGAGC
CGAGGATGATGAGGCGGCGCGACGGGTAGTCGGACTTCTGGAGGTCGTCGAGGAGCAGGCGCGCGAGGAGGAAGTGGCCCAGGTGGTTGACGCCCACGCT
CATCTCGTACCCGTCGGCGGTGAACGTCGGCGTCCGCGCCGGAGTCGAGCGGCATCCCGGCGCGGCGGAAGTTGTCGACGAACTGGCGGACGCTGTCGAG
GGAAGCGAGGTCGAGGTGCATGATGGTGTAGCTGCCCTCCGCCATGCCCGCGCCCTTGGCGGCCTTGGCCGTCTTGAGGAAGTCGCGGCAGGCCATGACG
ACGTGCCACTTGCCCGTCTCCGCCAGCGCCTTGGCCGCGGCCAGGCCGAGCCCCGACGACGCGCCCGTGATCACCACCACGCCCTGGCGCAGCGTCTTCT
TGCCGTCCTTGGTCGCCGTGCTGGCACCCGGGGTGGCCACGGGCGCCGTCGCCACCGCCTGCGCCCTCACCGAAAGCGACGGCACCTGCA