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Detailed information on CNT30521308


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692364Setaria italicaOryza sativa78.1677.5393.36873forward
CNT30449495Setaria italicaSaccharum spontaneum79.2372.7292.2885forward
CNT30350898Setaria italicaEragrostis tef78.4278.6491.78876forward
CNT30116111Setaria italicaOryza nivara30.2638.6392.31338forward
CNT30603820Setaria italicaOryza punctata78.4281.1993.49876forward

Expression of CNT30521308

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 2 (96 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSFTATFFTLNPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMTPVSTRPTGTVPIPPILYTS*

>peptide 3 (33 aa)
KLNDTQALALNNRRSTSISGNLSFAKSKYKNCM*

Sequence

>CNT30521308
AAACTTAATGACACCCAGGCACTTGCATTGAACAATCGCAGGAGCACATCAATCTCAGGTAATTTAAGTTTTGCCAAATCCAAATATAAAAACTGTATGT
AAACATCAAACAGACCGAGGACACATTGCCAGCTGAGATTAATAGTTCACGAGATAACAGCAATGGCCATAGACAAAACTTAAGTGATATTATAGCATCT
AGGCATGCCAAAAGCAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTGCAGCCTTAGTCACCTTGGCGCCCGTTGGGTCCTTCTTCTCCA
CGCTCTTGATGACTCCAACAGCAACCGTTTGCCTCATGTCACGGACAGCAAAACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTT
GGTGGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCGGATCGTCTGTCGATCTTGGTAATGAGC
TCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGG
TGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACGAACCCACGCTTGAGATCCTTCACAGCAACGTTCTTCACGTTGAACCCAAC
GTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACTGACTTCACCTCAGTAGTCAGGCCAGTGGGACCAAAGGTGACAAGCATACCA
GGCTTGATGACACCGGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGAAGACGCAGGGGCTTGTCCGAAG
GCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAGGGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAA
ACCGGAGATGGGGACGAAGGCAATCTTGTCAGGGTTGTAACCCACCTTCTTCAGGTAGGAGGAGACTTCCTTCACAATCTCATCATAACGGGCCTTGGAG
TACTTGGGAGTGGTGGC