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Detailed information on CNT30521306


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673018Setaria italicaSetaria viridis45.4177.87100366forward
CNT30187257Setaria italicaSecale cereale9.5532.2288.3177forward
CNT30555748Setaria italicaOryza glaberrima13.442.3589.81108forward
CNT30437365Setaria italicaAegilops tauschii15.5136.3488.8125forward
CNT30657835Setaria italicaTriticum dicoccoides13.7739.7889.19111forward
CNT30681536Setaria italicaTriticum urartu15.5153.4288.8125forward
CNT30351340Setaria italicaEragrostis tef8.192393.9466reverse complement
CNT30597191Setaria italicaOryza meridionalis13.437.2490.74108forward
CNT30150109Setaria italicaBrachypodium distachyon14.3925.1184.48116forward
CNT30117996Setaria italicaOryza nivara22.8324.7683.7184forward

Expression of CNT30521306

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MLCMYSVSLYLTKNMLLRVLKKRSIDCYLHAPDPSAVADVAEAGAAGAAADGESGGGLEPLEWSDGGGGGHREGPR

>peptide 2 (46 aa)
MHLILPPLLTLPKPELLERRLTGSLAVDLSPWNGATEVAAAIAKDPV

>peptide 3 (38 aa)
RQETDEAVEELRIQYITMCMRISLAGASIHICMLLSLR*

>peptide 4 (38 aa)
MPMHQFLTSYYSVAFNSDRLSSCLFGRACSVCTLFLST*

>peptide 5 (29 aa)
MYIRTYTQDGNTKRKGINKQATLNRASNN*

Sequence

>CNT30521306
TACGTCAAGAAACAGATGAGGCAGTGGAGGAATTGCGTATACAATATATTACGATGTGTATGCGTATAAGTTTAGCCGGCGCTAGCATTCACATATGCAT
GCTCCTCAGCCTACGTTGATACATGTACATTCGTACATACACACAGGACGGAAACACGAAAAGAAAGGGAATTAACAAGCAGGCGACTTTAAACAGAGCG
TCAAATAATTAAGTTGCCAAAACCGAGTAGACACTTCATCCACGGTCGCTCACGAGCGAGCGGTCCGCGCGATAAGCTTATTTGGCGCCGCCGGTCTTAC
TCGGAGCCTGGGGGCTTGTAGGCGATGAACATGACGCACTGCACCTGCTTGATGTTGTCGAAGCCGATGATACGGATGTAACAGTCGGGGTAGTCGATCT
GCTTTAGGACCTCGTCCGTGGAGAGAGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGTTGCCCTCCGCCGGCCACACCTGAGCAATTAACAATGCCCA
TGCATCAGTTCCTGACTTCCTACTACTCAGTTGCATTTAACTCAGATCGATTGTCGAGCTGTTTATTCGGTCGTGCATGCTCTGTATGTACTCTGTTTCT
CTCTACTTAACGAAAAACATGCTATTGCGCGTCTTAAAAAAAAGATCGATCGATTGTTACCTGCATGCACCTGATCCTTCCGCCGTTGCTGACGTTGCCG
AAGCCGGAGCTGCTGGAGCGGCGGCTGACGGGGAGTCTGGCGGTGGACTTGAGCCCCTGGAATGGAGCGACGGAGGTGGCGGCGGCCATCGCGAAGGACC
CCGTCA