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Detailed information on CNT30521302


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 8e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672978Setaria italicaSetaria viridis34.3565.1299.8506forward
CNT30727586Setaria italicaCorchorus capsularis64.3673.4987.03948forward
CNT30712080Setaria italicaGlycine max23.1547.185.92341forward
CNT30287202Setaria italicaTriticum aestivum32.1165.7989.85473forward
CNT30564257Setaria italicaActinidia chinensis60.978.2787.74897forward
CNT30721807Setaria italicaTriticum spelta19.5532.0488.89288forward
CNT30368387Setaria italicaSorghum bicolor39.5167.4491.58582forward
CNT3052982Setaria italicaAmborella trichopoda23.2226.1585.96342forward
CNT30113122Setaria italicaFicus carica32.7958.1987.78483forward

Expression of CNT30521302

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSLTATFFTLKPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMIPVSTRPTGTVPIPPILYTS*

>peptide 2 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGFVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 3 (43 aa)
RLPTRLKMPKRAHIGIKAFKFCPSRYNKRVPKQQTHGTPPADL*

Sequence

>CNT30521302
GACGACTCCCAACTCGTTTAAAGATGCCCAAAAGAGCACACATAGGTATTAAAGCATTCAAGTTTTGCCCAAGCAGATATAATAAGAGGGTACCTAAACA
ACAAACACATGGCACACCGCCAGCGGACCTTTAAAAGTTCAACGACAACAGCAATGACCGGGGACAAAACTAATATGTGATAGTGAAAGTTATCTAGGTA
TCGCAAAAGCAGACACAGGATTAACCACCAGGCGCATCATTTCTTCTTGGCGGCAGCCTTGGTAACCTTGGCGCCGGTCGGGTCCTTCTTCTCCACGCTC
TTGATGACTCCCACAGCAACTGTCTGTCTCATGTCACGGACAGCGAAGCGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTTCGTGG
GAATCATCTTCACCATACCAGCATCACCGTTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCGGATCGCCTGTCGATCTTGGTAATGAGCTCAGC
AAACTTGACAGCTATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGTGG
CAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCT
TGGAGTTGGAGGCCACGAACCCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGAAGCCAACGTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTC
GTGGTGCATCTCAACAGACTTCACCTCAGTAGTCAGGCCAGTTGGACCAAAGGTGACAAGCATACCAGGCTTGATGATACCGGTCTCAACACGGCCAACA
GGGACGGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCCGAAGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCT
CGAGCAGGGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAAACCGGAGATGGGGACGAAGGCAATCTTGTCAGG
GTTGTAACCCACCTTCTTCAGGTAGGAGGAGACTTCCTTAACAATCTCATCATAACGGGCCTTGGAGTACTTGGGAGTGGTGGCGTCCATCTACGAACAG
ATTATCAATAAAACATCATTATTAGCTTAACTGAAGAGATCGCATGAACAGCAGACAAACTGTATATACACAAGAACAGTATCAATTAATGTTAAATGGC
ACACGGCACTAGTTTAGGGAATAAAGTTGTAGCTAAATTCTAACAAAGCACATTATTACTAAATACTAACAAAGCACATTAATTAACAATACCAATCATA
GGAAGATGGTTAAATAACACAACTTGTGTTCTCATTCTGTATGCTACATTTCAAACTTCATAAAACTACTCAA