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Detailed information on CNT30521234


BLAST search results

BLAST vs Swiss-Prot:
sp|O65101|PSAH_MAIZE, E-value = 2e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532753Setaria italicaEucalyptus grandis14.2541.5383.5103forward
CNT30285918Setaria italicaTriticum aestivum14.822.7788.79107forward
CNT30384456Setaria italicaTriticum turgidum14.82088.79107forward
CNT30591852Setaria italicaMusa acuminata12.7222.0690.2292forward
CNT30435366Setaria italicaAegilops tauschii14.823.5289.72107forward
CNT30241486Setaria italicaAvena sativa14.828.9291.59107forward
CNT30655703Setaria italicaTriticum dicoccoides14.829.8189.72107forward
CNT30131217Setaria italicaLolium perenne14.821.4493.46107forward
CNT3010986Setaria italicaZea mays11.0724.779080forward
CNT30679604Setaria italicaTriticum urartu14.831.8589.72107forward
CNT30367620Setaria italicaSorghum bicolor11.4821.5691.5783forward
CNT30704201Setaria italicaPrunus avium14.841.3182.24107forward
CNT30149479Setaria italicaBrachypodium distachyon13.6925.7188.8999forward
CNT30582663Setaria italicaEchinochloa crusgalli11.229.5690.1281forward
CNT30604128Setaria italicaOryza punctata10.5126.2196.0576forward

Expression of CNT30521234

Peptides detected in this lncRNA

>peptide 1 (47 aa)
TPTIYIRTLVDNKADRLYEARSTNFNCICRSTISTSIKRGSDRISTG*

>peptide 2 (36 aa)
PQLSIYELWLITKPTGCTRHAAPILIVYAGVQYQHR*

>peptide 3 (33 aa)
MELPPRPFTATGCTETAAREAMAFAEYCRGYYR*

Sequence

>CNT30521234
ACCCCAACTATCTATATACGAACTTTGGTTGATAACAAAGCCGACAGGCTGTACGAGGCACGCAGCACCAATTTTAATTGTATATGCCGGAGTACAATAT
CAACATCGATAAAAAGAGGCAGCGATCGAATATCAACAGGATAACAGGCAGAGATCCATGGTGATGATCGGAGCTAGCAGTACAAGCAAAGCTAGTAGGC
GAATGGAGGAGGATCGGAGGAGCAACTGAACTTAGATCTTGCCGCGCGGGCCCGGCACCGGCGGCTGCTGCGGCCCCTCTTGGTGAACGGCCCCGCGAAC
GTCTCGAAGAACTTGCTCTGCAAACGCAGGAATCGTTCGAAGCAAACAGAGTTTTGAGTAAGATTGCGCATGCAAAAAAAACCGCAGAAATTAAGTGGAT
GCTGATGCATCGATCATAACAACCTGAAGCGGGTTGTAGGGCGAGGGCGCGTCGGAGCCGTAGAGGTCCCACTGCCCGGTGGTGTTGCCGATGTCGTCGA
GGTCGAAGTAGACGCTCTTGTCGCCGTACTTGGCCACCACGGCGGCGCGGGGCCTGCGGGCGGAGCGGCAGGCGGCGCGGGGCGCCGGCCTGACGGCGAG
CCTCCTGCCGGAGATGGAGCTGCCGCCGAGGCCCTTCACGGCGACCGGCTGCACGGAGACGGCGGCGAGGGAGGCCATGGCGTTCGCTGAGTACTGTCGA
GGTTACTACCGGTAGTGTCCAAG