Detailed information on CNT30521214


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 4e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30292897Setaria italicaTriticum aestivum57.6971.9984.67424forward
CNT30390478Setaria italicaTriticum turgidum57.6935.5788.68424forward
CNT30249726Setaria italicaAvena sativa57.6952.8787.5424forward
CNT30582414Setaria italicaEchinochloa crusgalli33.3341.3995.92245forward
CNT30556995Setaria italicaPanicum hallii41.543.3997.38305forward

Expression of CNT30521214

Peptides detected in this lncRNA

>peptide 1 (42 aa)
PSKKSTVQVPSYLKYIYTRAHCSINDLIAYPCTHTHVERTST*

>peptide 2 (58 aa)
MAFTVKRGRLVSAAPERPLGLECTKPLFITWLAMGAYAVAISTSACLSRTGLFLPAKW*

>peptide 3 (86 aa)
MPPKKKPPVNLAQPSAVCSLSASFLRPVSVSVGAVDGSPSLKEATPYMVRQTLRMVTSPAAPRAPAWPCTGVLRSGPVRAKGPTRR*

Sequence

>CNT30521214
ATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAGTTACTTGAAGTACATTTATACACGTGCTCACTGCTCAATCAACGACCTCATCGCCTACCCATGCAC
GCACACGCATGTAGAGAGGACGTCTACTTGAAGTAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGACCACGCCGGAGATGCCGCCGAAGA
AGAAGCCTCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCGGTGAGCGTGAGCGTGGGCGCCGTGGACGGGTC
GCCCTCGTTGAAGGAGGCGACGCCGTACATGGTGAGGCAGACGCTGAGGATGGTGACGAGCCCGGCGGCGCCCAGGGCGCCCGCCTGGCCGTGCACGGGC
GTGTTGCGGAGCGGGCCGGTGAGGGCGAAGGGGCCCACGAGGAGGTAGCCGTGCGCAAGCCCGACCTCGATGCCGCGGAGCAGCGGGCTCACGGCGGTGC
GGTAGGCCGGGAGGTTGGAGAGGTACCAGGCGATGAGCGGGCTGGATGGCCTTCACGGTGAAGCGGGGCCGCCTGGTCAGCGCAGCGCCTGAAAGGCCCC
TGGGCCTCGAGTGCACCAAGCCGCTCTTCATCACCTGGCTCGCCATGGGAGCGTACGCGGTAGCCATCTCGACCTCTGCCTGTCTCTCACGAACAGGGCT
CTTCCTTCCTGCAAAATGGTAGAAGAGGTCTCCTT