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Detailed information on CNT30521203


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 1e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30288480Setaria italicaTriticum aestivum14.8623.3885.4137forward
CNT30685379Setaria italicaTriticum urartu16.8123.3887.74155forward
CNT30371494Setaria italicaOryza glumipatula16.2721.986.67150forward
CNT30104556Setaria italicaOryza rufipogon15.5152.3886.71143forward
CNT30118036Setaria italicaOryza nivara16.2720.5886.67150forward
CNT30604884Setaria italicaOryza punctata15.1820.5385140forward

Expression of CNT30521203

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MNKQQEYNSSVLIDRLYYLHAPDPSAVADEAGADGAAAHGESGGGLEPLEWSN*

>peptide 2 (48 aa)
MHLILPPLLTKPVLMERRLTGSPAVDLSPWNGATEVADEAITVGAMAY*

>peptide 3 (30 aa)
MLTTSIINQGEEEAERGLLESLVSNFLLPSA

>peptide 4 (34 aa)
MFSKPMVALLMGTHARPIVTEAFRWGKMEIIKRC*

Sequence

>CNT30521203
TTGGCAATCTAGTGGTACATTGTCGTATGAATATGATCGCTGTGTATACATTCGTGTAAATATATCACTATGTGCAAAGGTATAGCCGGAGCTATGTACC
ATGCATTCACATGTTTAGCAAGCCAATGGTAGCATTGCTCATGGGCACGCATGCTCGCCCAATAGTTACAGAAGCGTTCAGATGGGGAAAAATGGAGATA
ATCAAGCGGTGTTGAACTGAGACGGACAGGTATTTAAGCTTTTTATTTGGCGCCGCCGGTCTACTCGCTGCCCGGGGGCTTGTAGGCGATGAACATGACG
CACTGCACCTGCTTGATGTTGTCGAAGCCGATGATACGGATGTAACAGTCGGGGTAGGCCTTCTTGCACTCCTCGAACTCAGCGTACACCTGGGTGGCCT
CGGTGCAGCCGAACCCGATCTTGCTGAACTCGAGGCAGGGGATCCAGTTCTTCCGGATCAGGTAGTCGATCTGCTTCAGGACCTCGTCCGTGGAGAGAGG
TGGCAGGTAGGAGAGGGTCTCGAACTTCTTGTTGCCCTCCGCCGGCCACACCTGAGCAACGACACTTTCATATCAGTTCCTAAACTTCCTATTGAGTTGC
ATTATTTCTATGAACAAACAGCAAGAATATAATTCCAGTGTCTTGATCGATCGATTATATTACCTGCATGCACCTGATCCTTCCGCCGTTGCTGACGAAG
CCGGTGCTGATGGAGCGGCGGCTCACGGGGAGTCCGGCGGTGGACTTGAGCCCCTGGAATGGAGCAACTGAGGTGGCCGACGAGGCCATCACGGTCGGCG
CCATGGCTTACTAGCTAGTGCTAGTATATGCTTACTACTAGTATTATTAACCAAGGAGAAGAGGAAGCAGAGCGAGGCTTGCTTGAGTCCCTGGTCTCGA
ACTTCTTGTTGCCCTCCGCCGG