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Detailed information on CNT30521201


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 9e-154

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672814Setaria italicaSetaria viridis98.2399.1699.241057forward

Expression of CNT30521201

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSFTATFFTLNPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMIPVSTRPTGTVPIPPILYTS*

>peptide 2 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

Sequence

>CNT30521201
CCAGGCACTTGCATTGAACAATCGCAGGAGCACATCAATCTCAGGTAATTTAAGTTTTGCCAAATCCAAATATAAAAACTGTATGTAAACATCAAACAGA
CCGAGGACACATTGCCAGCTGAGATTAATAGTTCACGAGATAACAGCAATGGCCATAGACAAAACTTAAGTGATATTATAGCATCTAGGCATGCCAAAAG
CAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTGCAGCCTTAGTCACCTTGGCGCCCGTTGGGTCCTTCTTCTCCACGCTCTTGATGACT
CCAACAGCAACCGTTTGCCTCATGTCACGGACAGCAAAACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTTGGTGGGAATCATCT
TCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCGGATCGTCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGAC
AGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCC
TCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACGAACCCACGCTTGAGATCCTTCACAGCAACGTTCTTCACGTTGAACCCAACGTTGTCACCAGGAA
GGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACTGACTTCACCTCAGTAGTCAGGCCAGTGGGACCAAAGGTGACAAGCATACCAGGCTTGATGATACC
GGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGAAGACGGAGGGGCTTGTCCGAAGGCCTCTTGGGCTCG
TTGATCTGGTCAAGAGCCTCAAGCAGGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATTGGGACGAAGGCAATCTTGTCAGGGTTG
TATCCCACCTTCTTCAGGTAGGAGGAGACTTCCTTCACAATCTCATCATAACGGGCCTTGGAGTACTTGGGAGTGG