Detailed information on CNT30521178


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672574Setaria italicaSetaria viridis78.3266.7299.48383forward
CNT30513228Setaria italicaJuglans regia20.8613.1185.29102forward
CNT30403349Setaria italicaBeta vulgaris16.9723.8590.3683forward
CNT30300058Setaria italicaTriticum aestivum13.0920.7187.564forward
CNT30249492Setaria italicaAvena sativa21.4730.7987.62105forward
CNT30136078Setaria italicaLolium perenne10.6320.0888.4652forward
CNT30282Setaria italicaZea mays13.9122.3795.5968forward
CNT30211728Setaria italicaHelianthus annuus15.7529.1787.0177forward
CNT30721247Setaria italicaTriticum spelta21.8820.3890.65107forward
CNT30367289Setaria italicaSorghum bicolor21.4718.4295.24105forward
CNT3027382Setaria italicaPopulus trichocarpa20.8621.0783.33102forward
CNT30148668Setaria italicaBrachypodium distachyon19.2230.8289.3694forward
CNT30118099Setaria italicaOryza nivara21.2712.7692.31104forward

Expression of CNT30521178

Peptides detected in this lncRNA

>peptide 1 (50 aa)
WLPDNFLAQRSLIRAVTHLRVADETLQTSTRFYNTSTRETLPQNHQIHED*

>peptide 2 (36 aa)
MKHCRHPLGFTIQVHGKLCLKTTKFTKTNTGMSRVR*

>peptide 3 (50 aa)
MSLAAETMLVRAGLTSDVGFEHRKHLVDAVGNFLSGWDPGGVDVVDTRANA

Sequence

>CNT30521178
TGGCTTCCAGACAATTTTCTTGCCCAAAGATCATTAATACGAGCCGTAACACACCTCAGAGTTGCAGATGAAACACTGCAGACATCCACTCGGTTTTACA
ATACAAGTACACGGGAAACTTTGCCTCAAAACCACCAAATTCACGAAGACTAACACAGGTATGAGCAGGGTGCGATAATCGTGCCAAGAAAAATACTAAT
CTAACCCACAGACGAGCAGATACACGGTCCATATTATTCAAGACAAATGGCTTCTTTGATGGCACCCTCCTTGTAATTAAACGAAAAGCCACTGCAGGGA
CGGTTCTCACTTGGTGCTGGCGAGCTGGGTGCGGATGAGCTTGGCGGCAGAGACCATGTTGGTTAGGGCGGGCTTGACCTCCGATGTTGGTTTCGAGCAC
CGCAAGCATCTTGTTGATGCGGTCGGCAATTTCCTCAGTGGATGGGATCCTGGGGGAGTGGATGTCGTAGACACCAGGGCCAATGCCGG