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Detailed information on CNT30521106


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 3e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180865Setaria italicaSecale cereale47.5948.882.32345forward
CNT30287468Setaria italicaTriticum aestivum47.5979.8682.32345forward
CNT30221752Setaria italicaHordeum vulgare49.6653.8182.22360forward
CNT30386515Setaria italicaTriticum turgidum49.6626.0181.67360forward
CNT30555612Setaria italicaOryza glaberrima50.6235.1284.47367forward
CNT30436411Setaria italicaAegilops tauschii49.6654.6382.22360forward
CNT30658347Setaria italicaTriticum dicoccoides47.5963.8982.61345forward
CNT30136970Setaria italicaLolium perenne51.5958.5380.75374forward
CNT306440Setaria italicaZea mays36.6922.2484.96266forward
CNT30681645Setaria italicaTriticum urartu49.6624.6181.94360forward
CNT30720492Setaria italicaTriticum spelta37.9354.6781.82275forward
CNT30351770Setaria italicaEragrostis tef47.0334.9483.28341forward
CNT30365555Setaria italicaSorghum bicolor41.161.1981.88298forward
CNT30597241Setaria italicaOryza meridionalis40.5533.7583.67294forward
CNT30371468Setaria italicaOryza glumipatula34.0721.4684.62247forward
CNT30150944Setaria italicaBrachypodium distachyon4852.182.18348forward
CNT30104669Setaria italicaOryza rufipogon50.3444.0383.56365forward
CNT30578612Setaria italicaOryza barthii40.5525.9985.03294forward
CNT30585439Setaria italicaEchinochloa crusgalli33.3838.2387.6242forward
CNT30118025Setaria italicaOryza nivara40.5525.4184.01294forward
CNT30551876Setaria italicaOryza brachyantha39.7233.4984.38288forward

Expression of CNT30521106

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFSKPMVALLMGTHARPIVTEAFRWGKMEIIKRC*

Sequence

>CNT30521106
CATTTACGTAAGTAAAACAACCATGTTATAATGTTCCAACGAATTGGCAATCTAGTGGTACATTGTCGTATGAATATGATCGCTGTGTATACATTCGTGT
AAATATATCACTATGTGCAAAGGTATAGCCGGAGCTATGTACCATGCATTCACATGTTTAGCAAGCCAATGGTAGCATTGCTCATGGGCACGCATGCTCG
CCCAATAGTTACAGAAGCGTTCAGATGGGGAAAAATGGAGATAATCAAGCGGTGTTGAACTGAGACGGACAGGTATTTAAGCTTTTTATTTGGCGCCGCC
GGTCTACTCGCTGCCCGGGGGCTTGTAGGCGATGAACATGACGCACTGCACCTGCTTGATGTTGTCGAAGCCGATGACACGGATGTAACAGTCAGGGTAG
GCCTTCTTGCACTCCTCGAGCTCAGCGTACACCTGGGTGGCCTCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGCCCGTCGTAGTAAC
AGGGAGACCTGCTGTTCTCACGAAAGACGAACCCGACCTTGCTGAACTCGAGGCAGGGGATCCAGTTGTTCCGGATCAGGTACTCGACCTGCTTCAGGAG
CTGGTCGGTTGAGAGAGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGTTGCCCTCCGCCGGCCACACCTGAGCAACGACACTCTCATATCAGTTCCTA
AACTTCCTATTGAGTTGTATTATTT