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Detailed information on CNT30521103


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30222663Setaria italicaHordeum vulgare46.553.7583.82272forward
CNT30112090Setaria italicaFicus carica20.345.8188.24119forward
CNT3040359Setaria italicaMarchantia polymorpha21.7116.9682.68127forward

Expression of CNT30521103

Peptides detected in this lncRNA

>peptide 1 (42 aa)
PSKKSTVQVPSYLKYIYTRAHCSINDLIAYPCTHTHVERTST*

>peptide 2 (58 aa)
MAFTVKRGRLVSAAPERPLGLECTKPLFITWLAMGAYAVAISTSACLSRTGLFLPAKW*

>peptide 3 (36 aa)
MPPKKKPPVNLAQPSAVCSLSASFLRPVSVSGPTRR*

Sequence

>CNT30521103
ATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAGTTACTTGAAGTACATTTATACACGTGCTCACTGCTCAATCAACGACCTCATCGCCTACCCATGCAC
GCACACGCATGTAGAGAGGACGTCTACTTGAAGTAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGACCACGCCGGAGATGCCGCCGAAGA
AGAAGCCTCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCGGTGAGCGTGAGCGGGCCCACGAGGAGGTAGCC
GTGCGCAAGCCCGACCTCGATGCCGCGGAGCAGCGGGCTCACGGCGGTGCGGTAGGCCGGGAGGTTGGAGAGGTACCAGGCGATGAGCGGGCTGGATGGC
CTTCACGGTGAAGCGGGGCCGCCTGGTCAGCGCAGCGCCTGAAAGGCCCCTGGGCCTCGAGTGCACCAAGCCGCTCTTCATCACCTGGCTCGCCATGGGA
GCGTACGCGGTAGCCATCTCGACCTCTGCCTGTCTCTCACGAACAGGGCTCTTCCTTCCTGCAAAATGGTAGAAGAGGTCTCCTT