Detailed information on CNT30521034


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L4S3|HIRL1_ORYSJ, E-value = 7e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693652Setaria italicaOryza sativa90.492.7583.44320forward
CNT30675691Setaria italicaSetaria viridis25.9918.6286.9692forward
CNT30441068Setaria italicaAegilops tauschii39.5528.3487.86140forward
CNT30262753Setaria italicaBrassica rapa39.8316.2682.98141forward
CNT30471513Setaria italicaSaccharum spontaneum99.1585.1986.89351forward
CNT30219137Setaria italicaKalanchoe fedtschenkoi38.9823.7981.88138forward
CNT30370230Setaria italicaOryza glumipatula20.914.6887.8474forward
CNT30101718Setaria italicaOryza rufipogon67.5141.4982.01239forward
CNT30551158Setaria italicaOryza brachyantha19.2128.5786.7668forward

Expression of CNT30521034

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MSRTAPGPCGMNTDEALDDAPISFMVSKYWVMSTMSITSLAVKPSTLSRSPSTIACRCRAMPSPDRYLASASPSARLICTIFSASAFSFAA

>peptide 2 (36 aa)
TLLQHQRTSGGRRRSPAGGRRGSAWRCRAPRRGRAG*

>peptide 3 (40 aa)
PRCSSTSELVVGDGGALQEAVADLRGDVAHRAGAVRDEHR*

Sequence

>CNT30521034
CCACGCTGCTCCAGCACCAGCGAACTAGTGGTGGGAGACGGCGGAGCCCTGCAGGAGGCCGTCGCGGATCTGCGTGGCGATGTCGCGCACCGCGCCGGGG
CCGTGCGGGATGAACACCGATGAGGCCTTGGACGACGCGCCGATCTCCTTCATGGTGTCGAAGTACTGGGTGATGAGCACCATGTCCATCACGTCCTTGG
CGGTGAAGCCCAGCACGCTGTCACGCAGCCCGTCCACGATCGCCTGCCGCTGCCGGGCGATGCCCAGCCCGGACAGGTACTTGGCCTCCGCCTCCCCCTC
CGCGCGCTTGATCTGCACGATCTTCTCAGCCTCAGCCTTCTCGTTCGCGGCCAC