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Detailed information on CNT30521030


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 2e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673293Setaria italicaSetaria viridis63.1492.5498.04459forward

Expression of CNT30521030

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MAFTVKRGRLVSAAPERPLGLECTKPLFITWLAMGAYAVAISTSACLSRTGLFLPAKW*

>peptide 2 (48 aa)
MPPKKKPPVNLAQPSAVCSLSASFLRPVSVSVGAVDGGPVRAKGPTRR*

Sequence

>CNT30521030
TCCCCAAGTAAATTAACTCCATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAGTTACTTGAAGTACATTTATACACGTGCTCACTGCTCAATCAACGAC
CTCATCGCCTACCCATGCACGCACACGCATGTAGAGAGGACGTCTACTTGAAGTAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGACCAC
GCCGGAGATGCCGCCGAAGAAGAAGCCTCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCGGTGAGCGTGAGC
GTGGGCGCCGTGGACGGCGGGCCGGTGAGGGCGAAGGGGCCCACGAGGAGGTAGCCGTGCGCAAGCCCGACCTCGATGCCGCGGAGCAGCGGGCTCACGG
CGGTGCGGTAGGCCGGGAGGTTGGAGAGGTACCAGGCGATGAGCGGGCTGGAGGTGATGGGCGTCTCCAGGCTGGATGGCCTTCACGGTGAAGCGGGGCC
GCCTGGTCAGCGCAGCGCCTGAAAGGCCCCTGGGCCTCGAGTGCACCAAGCCGCTCTTCATCACCTGGCTCGCCATGGGAGCGTACGCGGTAGCCATCTC
GACCTCTGCCTGTCTCTCACGAACAGGGCTCTTCCTTCCTGCAAAATGGTAGAAGAGGTCTCCTTGTATCGGCCCAATTAAAGTTTGTGATCTTTAGATC
CTGCAGGGGGTGTGTGAGAAGATCTGT