Detailed information on CNT30521026


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374269Setaria italicaArabidopsis thaliana25.8822.0183.5103forward
CNT3044735Setaria italicaPrunus dulcis27.6421.787.27110forward
CNT30589954Setaria italicaMusa acuminata37.1927.5683.78148forward
CNT30553864Setaria italicaOryza glaberrima87.6917.4891.69349forward
CNT30596265Setaria italicaOryza meridionalis29.6547.296.61118forward
CNT30104905Setaria italicaOryza longistaminata28.1415.0994.64112forward
CNT30149311Setaria italicaBrachypodium distachyon39.273.2494.87156forward
CNT30101731Setaria italicaOryza rufipogon86.1843.5892.13343forward

Expression of CNT30521026

Peptides detected in this lncRNA

>peptide 1 (85 aa)
HPDGIYGDGHKRLEHLDEGHGEVDVRGVGEPEGHGVERADGDDGGGVELRGHGGGGGEEQKAMCTMVSEMGKGQLYILGSRMYLL*

Sequence

>CNT30521026
CACCCCGATGGAATATACGGCGACGGGCATAAGCGCCTTGAGCATCTGGATGAAGGACACGGAGAGGTAGATGTACGCGGAGTTGGAGAACCAGAGGGAC
ATGGCGTAGAGCGCGCCGATGGGGACGACGGAGGAGGTGTAGAGCTGCGGGGTCATGGCGGGGGAGGTGGGGAGGAGCAGAAGGCCATGTGCACCATGGT
GAGCGAGATGGGGAAGGGCCAGTTGTACATCTTGGGGTCGAGGATGTACTTGTTGTAGACGATGACGGAGAAGGAGAGGAAGATCCACACCGCGACGTAG
CAGTAGGAGAGGAGCACCTTCCGGAGCACCGACTCCGACATGCCGCCGCCGCCGCCGTCCCGCCCCATGCCGCCGCCGCCGCCTCCCTGCTGGGCCCC