CANTATAdb - search

Detailed information on CNT30520974

BLAST search results

BLAST vs Swiss-Prot:
sp|P20121|PSAH_PEA, E-value = 2e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693708	Setaria italica	Oryza sativa	22.48	33.76	91.89	185	forward
CNT30673389	Setaria italica	Setaria viridis	34.87	67.06	100	287	forward
CNT30240454	Setaria italica	Avena sativa	22.6	52.84	84.95	186	forward
CNT30720193	Setaria italica	Triticum spelta	22.48	33.88	83.24	185	forward
CNT30338878	Setaria italica	Eragrostis tef	22.6	23.85	92.47	186	forward
CNT30101676	Setaria italica	Oryza rufipogon	18.23	35.38	91.33	150	forward
CNT30116867	Setaria italica	Oryza nivara	11.54	39.42	93.68	95	forward

Expression of CNT30520974

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MELPPRPFTATGCTETAAREAMAFAEYCRGYYR*

>peptide 2 (43 aa)
YIRTLVDNKADRLYEARSTNFNCICRSTISTSIKRGSDRISTG*

>peptide 3 (32 aa)
IYELWLITKPTGCTRHAAPILIVYAGVQYQHR*

Sequence

>CNT30520974
CTATATACGAACTTTGGTTGATAACAAAGCCGACAGGCTGTACGAGGCACGCAGCACCAATTTTAATTGTATATGCCGGAGTACAATATCAACATCGATA
AAAAGAGGCAGCGATCGAATATCAACAGGATAACAGGCAGAGATCCATGGTGATGATCGGAGCTAGCAGTACAAGCAAAGCTAGTAGGCGAATGGAGGAG
GATCGGAGGAGCAACTGAACTTAGATCTTGCCGCGCGGGCCCGGCACCGGCGGCTGCTGCGGCCCCTTCTTGATCGGCAGGAGGTCCGGCGACGCCGACG
CGCTGACGTAGGCCAGCAGGGATCCGCCGCCCAGCAGCAGGAACTTGAGCAGCAGGCCCCTCTTGGTGAACGGCCCCGCGAACGTCTCGAAGAACTTGCT
CTGCAAACGCAGGAATCGTTCGAAGCAAACAGAGTTTTGAGTAAGATTGCGCATGCAAAAAAAACCGCAGAAATTAAGTGGATGCTGATGCATCGATCAT
AACAACCTGAAGCGGGTTGTAGGGCGAGGGCGCGTCGGAGCCGTAGAGGTCCCACTGCCCGGTGGTGTTGCCGATGTCGTCGAGGTCGAAGTAGACGCTC
TTGTCGCCGTACTTGGCCACCACGGCGGCGCGGGGCCTGCGGGCGGAGCGGCAGCCTCCTGCCGGAGATGGAGCTGCCGCCGAGGCCCTTCACGGCGACC
GGCTGCACGGAGACGGCGGCGAGGGAGGCCATGGCGTTCGCTGAGTACTGTCGAGGTTACTACCGGTAGTGTCCAAGTGCGTACGTGCGCAAACTTAATT
CGGCGGATCGTGCTAAGGATCCG