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Detailed information on CNT30520920


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 2e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673014Setaria italicaSetaria viridis69.4186.82100481forward
CNT30516978Setaria italicaJuglans regia22.823.1783.54158forward
CNT30438727Setaria italicaAegilops tauschii38.183.5490.91264forward
CNT30662078Setaria italicaTriticum dicoccoides33.6280.3488.41233forward
CNT30454500Setaria italicaSaccharum spontaneum28.7254.9792.46199forward
CNT30135064Setaria italicaLolium perenne40.6949.3989.72282forward
CNT3014188Setaria italicaZea mays47.3342.9394.51328forward
CNT30720963Setaria italicaTriticum spelta45.1756.1988.18313forward
CNT30344813Setaria italicaEragrostis tef38.9651.6394.07270forward
CNT30620323Setaria italicaCajanus cajan31.612.2681.28219forward
CNT30604850Setaria italicaOryza punctata22.0815.7695.42153forward
CNT30551896Setaria italicaOryza brachyantha47.6249.7792.73330forward

Expression of CNT30520920

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MPPKKKPPVNLAQPSAVCSLSASFLRPVSVSVGAVDGSPSLKEATPYMVRQTLRMVTSPAAPRAPAWPCTGVLRSGPVRAKGPTRR*

Sequence

>CNT30520920
TAGTCATTAATTTTATCCCCAAGTAAATTAACTCCATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAGTTACTTGAAGTACATTTATACACGTGCTCAC
TGCTCAATCAACGACCTCATCGCCTACCCATGCACGCACACGCATGTAGAGAGGACGTCTACTTGAAGTAGTATGGGAGGTCGAGCACGTAGAGGAGGAA
GTAGGCCCAGACCACGCCGGAGATGCCGCCGAAGAAGAAGCCTCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGG
CCGGTGAGCGTGAGCGTGGGCGCCGTGGACGGGTCGCCCTCGTTGAAGGAGGCGACGCCGTACATGGTGAGGCAGACGCTGAGGATGGTGACGAGCCCGG
CGGCGCCCAGGGCGCCCGCCTGGCCGTGCACGGGCGTGTTGCGGAGCGGGCCGGTGAGGGCGAAGGGGCCCACGAGGAGGTAGCCGTGCGCAAGCCCGAC
CTCGATGCCGCGGAGCAGCGGGCTCACGGCGGTGCGGTAGGCCGGGAGCGTACGCGGTAGCCATCTCGACCTCTGCCTGTCTCTCACGAACAGGGCTCTT
CCTTCCTGCAAAATGGTAGAAGAGGTCTCCTTGTATCGGCCCAATTAAAGTTTGTGATCTTTAGATCCTGCAGGGGGTGTGTGAGAAGATCTG