Detailed information on CNT30520889


BLAST search results

BLAST vs Swiss-Prot:
sp|P26573|RBS_NICPL, E-value = 7e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673246Setaria italicaSetaria viridis93.9579.7993.27683forward
CNT30300099Setaria italicaTriticum aestivum21.3219.687.74155forward
CNT30393324Setaria italicaTriticum turgidum21.3214.7287.74155forward
CNT30665882Setaria italicaTriticum dicoccoides21.3216.8187.74155forward
CNT30684524Setaria italicaTriticum urartu21.3216.187.74155forward
CNT30597252Setaria italicaOryza meridionalis37.9660.6682.61276forward
CNT30104436Setaria italicaOryza rufipogon37.6950.1882.85274forward
CNT30578611Setaria italicaOryza barthii20.6315.5886.67150forward

Expression of CNT30520889

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MHLILPPLLTKPVLMERRLTGSPAVDLSPWNGATEVADEAITVGAMAY*

>peptide 2 (50 aa)
MGRGSSSSGSGSRSASGPRPWREVAGRRGSRTSCCPPPATPEQRHFHISS*

>peptide 3 (53 aa)
MNKQQEYNSSVLIDRLYYLHAPDPSAVADEAGADGAAAHGESGGGLEPLEWSN*

Sequence

>CNT30520889
GGGCACGCATGCTCGCCCAATAGTTACAGAAGCGTTCAGATGGGGAAAAATGGAGATAATCAAGCGGTGTTGAACTGAGACGGACAGGTATTTAAGCTTT
TTATTTGGCGCCGCCGGTCTACTCGCTGCCCGGGGGCTTGTAGGCGATGAACATGACGCACTGCACCTGCTTGATGTTGTCGAAGCCGATGATACGGATG
TAACAGTCGGGGTAGGCCTTCTTGCACTCCTCGAACTCAGCGTACACCTGGGTGGCCTCGGTGCAGCCGAACATGGGCAGGGGATCCAGTTCTTCCGGAT
CAGGTAGTCGATCTGCTTCAGGACCTCGTCCGTGGAGAGAGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGTTGCCCTCCGCCGGCCACACCTGAGCA
ACGACACTTTCATATCAGTTCCTAAACTTCCTATTGAGTTGCATTATTTCTATGAACAAACAGCAAGAATATAATTCCAGTGTCTTGATCGATCGATTAT
ATTACCTGCATGCACCTGATCCTTCCGCCGTTGCTGACGAAGCCGGTGCTGATGGAGCGGCGGCTCACGGGGAGTCCGGCGGTGGACTTGAGCCCCTGGA
ATGGAGCAACTGAGGTGGCCGACGAGGCCATCACGGTCGGCGCCATGGCTTACTAGCTAGTGCTAGTATATGCTTACTACTAGTATTATTAACCAAGGAG
AAGAGGAAGCAGAGCGAGGCTTGCTTG