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Detailed information on CNT30520861


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 7e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30582550Setaria italicaEchinochloa crusgalli18.8122.3186.33139forward
CNT30556876Setaria italicaPanicum hallii36.8195.4485.29272forward

Expression of CNT30520861

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MNKQQEYNSSVLIDRLYYLHAPDPSAVADEAGADGAAAHGESGGGLEPLEWSN*

>peptide 2 (48 aa)
MHLILPPLLTKPVLMERRLTGSPAVDLSPWNGATEVADEAITVGAMAY*

>peptide 3 (28 aa)
MLTTSIINQGEEEAERGLLESLPAVDLSP

Sequence

>CNT30520861
TCGCCCAATAGTTACAGAAGCGTTCAGATGGGGAAAAATGGAGATAATCAAGCGGTGTTGAACTGAGACGGACAGGTATTTAAGCTTTTTATTTGGCGCC
GCCGGTCTACTCGCTGCCCGGGGGCTTGTAGGCGATGAACATGACGCACTGCACCTGCTTGATGTTGTCGAAGCCGATGATACGGATGTAACAGTCGGGG
TAGTAACAGGGAGACGTGCTGTTCTCACGATAGACGAACCCGATCTTGCTGAACTCGAGGCAGGGGATCCAGTTCTTCCGGATCAGGTAGTCGATCTGCT
TCAGGACCTCGTCCGTGGAGAGAGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGTTGCCCTCCGCCGGCCACACCTGAGCAACGACACTTTCATATCA
GTTCCTAAACTTCCTATTGAGTTGCATTATTTCTATGAACAAACAGCAAGAATATAATTCCAGTGTCTTGATCGATCGATTATATTACCTGCATGCACCT
GATCCTTCCGCCGTTGCTGACGAAGCCGGTGCTGATGGAGCGGCGGCTCACGGGGAGTCCGGCGGTGGACTTGAGCCCCTGGAATGGAGCAACTGAGGTG
GCCGACGAGGCCATCACGGTCGGCGCCATGGCTTACTAGCTAGTGCTAGTATATGCTTACTACTAGTATTATTAACCAAGGAGAAGAGGAAGCAGAGCGA
GGCTTGCTTGAGTCCCTTCCGGCGGTGGACTTGAGCCCC