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Detailed information on CNT30520857

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30673169	Setaria italica	Setaria viridis	40.89	100.78	97.93	386	forward
CNT30533956	Setaria italica	Eucalyptus grandis	18.86	25.5	82.02	178	forward
CNT30629841	Setaria italica	Vigna unguiculata	20.55	33.16	82.47	194	forward
CNT30292923	Setaria italica	Triticum aestivum	21.72	89.91	92.68	205	forward
CNT30222283	Setaria italica	Hordeum vulgare	13.88	31.19	92.37	131	forward
CNT30564216	Setaria italica	Actinidia chinensis	12.92	54.71	87.7	122	forward
CNT3084712	Setaria italica	Vigna radiata	13.88	46.29	82.44	131	forward
CNT30437582	Setaria italica	Aegilops tauschii	12.29	35.15	91.38	116	forward
CNT30683149	Setaria italica	Triticum urartu	21.72	46.28	92.2	205	forward
CNT30582252	Setaria italica	Echinochloa crusgalli	23.41	33.54	95.48	221	forward
CNT30115596	Setaria italica	Oryza nivara	13.67	60	84.5	129	forward

Expression of CNT30520857

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MFRASNCISNFQSCEIDQNESHKMTELKSRF*

>peptide 2 (52 aa)
MSGLEVMGVSRLPMKGSPLMGCTTWYVVCSRTTDSFYHQSQRILFDHTKIYY*

>peptide 3 (90 aa)
MLPIAKSQIDQNYKKDASLFRCSVDPLTFSGWMAFTVKRGRLVSAAPERPLGLECTKPLFITWLAMGAYAVAISTSACLSRTGLFLPAKW*

Sequence

>CNT30520857
CCAAGAACGAAGAGTGTACAAATACAACACCTAGTCATTAATTTTATCCCCAAGTAAATTAACTCCATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAG
TTACTTGAAGTACATTTATACACGTGCTCACTGCTCAATCAACGACCTCATCGCCTACCCATGCACGCACACGCATGTAGAGAGGACGTCTACTTGAAGT
AGTATGGGAGCGGGCCGGTGAGGGCGAAGGGGCCCACGAGGAGGTAGCCGTGCGCAAGCCCGACCTCGATGCCGCGGAGCAGCGGGCTCACGGCGGTGCG
GTAGGCCGGGAGGTTGGAGAGGTACCAGGCGATGAGCGGGCTGGAGGTGATGGGCGTCTCCAGGCTGCCGATGAAGGGGTCGCCGTTGATGGGCTGCACC
ACCTGGTACGTTGTCTGCTCAAGAACAACAGACAGTTTCTATCATCAGAGCCAAAGAATTTTGTTTGATCATACAAAGATATATTATTGAATTGCTAATG
TTCAGAGCATCAAATTGTATATCCAATTTCCAGTCCTGTGAGATAGATCAAAATGAATCACACAAGATGACTGAACTGAAATCAAGATTCTAGCAGCAGC
ACACATGCAAAGAACTGATCGATTTGGAAGCATTTTGAATGAAATTGATAATTCATGTTGCCTATAGCCAAGAGCCAAATCGATCAAAACTATAAAAAAG
ATGCATCACTATTTCGTTGCTCAGTAGATCCACTGACCTTCTCAGGCTGGATGGCCTTCACGGTGAAGCGGGGCCGCCTGGTCAGCGCAGCGCCTGAAAG
GCCCCTGGGCCTCGAGTGCACCAAGCCGCTCTTCATCACCTGGCTCGCCATGGGAGCGTACGCGGTAGCCATCTCGACCTCTGCCTGTCTCTCACGAACA
GGGCTCTTCCTTCCTGCAAAATGGTAGAAGAGGTCTCCTTGTAT