Detailed information on CNT30520842


BLAST search results

BLAST vs Swiss-Prot:
sp|O22567|DXS1_ORYSJ, E-value = 2e-106

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316020Setaria italicaCorylus avellana21.7840.5481.9105forward
CNT30679392Setaria italicaTriticum urartu22.8227.0991.82110forward
CNT30102577Setaria italicaOryza rufipogon27.848.3891.04134forward
CNT30580219Setaria italicaEchinochloa crusgalli35.6818.9685.47172forward

Expression of CNT30520842

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAQKGLRPSQARPAANVTACCSAIPTSKQRLGKRRRK*

>peptide 2 (80 aa)
GTPMPLPLGYRKQDGRSSMAAAVATMWQSSASSDGAMTTMLGRHAMYVTSNAPQWVGPSAPTSPALSMANRTGSFCRKDE*

>peptide 3 (79 aa)
RHADAVASRVPEAGWAVVDGRGGGDHVAELGLVGRGHDHHVGQARHVRDVERAAVGGPVRADQPGPVHGEPHRELLQEG*

>peptide 4 (37 aa)
AARRCRCLSGTGSRMGGRRWPRRWRPCGRARPRRTGP*

Sequence

>CNT30520842
GCGGCACGCCGATGCCGTTGCCTCTCGGGTACCGGAAGCAGGATGGGCGGTCGTCGATGGCCGCGGCGGTGGCGACCATGTGGCAGAGCTCGGCCTCGTC
GGACGGGGCCATGACCACCATGTTGGGCAGGCACGCCATGTACGTGACGTCGAACGCGCCGCAGTGGGTGGGCCCGTCCGCGCCGACCAGCCCGGCCCTG
TCCATGGCGAACCGCACCGGGAGCTTCTGCAGGAAGGATGAGTAGATGGCGCAGAAGGGCTTGAGGCCCTCGCAGGCCAGGCCGGCGGCGAACGTGACGG
CGTGCTGCTCGGCGATCCCGACGTCGAAGCAGCGGTTGGGGAAGCGGCGGAGGAAGTAGTTGAGCCCCGTGCCGCCGCCCATGGCCGCGTGGATGGCGAC
GATTTTGCTGTCCTGCTCGGCCTCCGCGATGAGCGCCTCGGCGAAGTAGTTGGTGTAGGACAGCGTCTTGGCCGGGGACTTG