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Detailed information on CNT30520812


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 2e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555732Setaria italicaOryza glaberrima63.8342.1181.18510forward

Expression of CNT30520812

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFSKPMVALLMGTHARPIVTEAFRWGKMEIIKRC*

Sequence

>CNT30520812
TACATTGTCGTATGAATATGATCGCTGTGTATACATTCGTGTAAATATATCACTATGTGCAAAGGTATAGCCGGAGCTATGTACCATGCATTCACATGTT
TAGCAAGCCAATGGTAGCATTGCTCATGGGCACGCATGCTCGCCCAATAGTTACAGAAGCGTTCAGATGGGGAAAAATGGAGATAATCAAGCGGTGTTGA
ACTGAGACGGACAGGTATTTAAGCTTTTTATTTGGCGCCGCCGGTCTACTCGCTGCCCGGGGGCTTGTAGGCGATGAACATGACGCACTGCACCTGCTTG
ATGTTGTCGAAGCCGATGATACGGATGTAACAGTCGGGGTAGGCCTTCTTGCACTCCTCGAACTCAGCGTACACCTGGGTGGCCTCGGTGCAGCCGAACA
TGGGCAGCTTCCACATGGTCCAGTAGCGCCCGTCGTAGTAACAGGGAGACGTGCTGTTCTCACGATAGACGAACCCGATCTTGCTGAACTCGAGCTCAGC
GTACACCTGGGTGGCCTCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGCCCGTCGTAGTAACAGGGAGACCTGCTGTTCTCACGAAAG
ACGAACCCGACCTTGCTGAACTCGAGGCAGGGGATCCAGTTGTTCCGGATCAGGTACTCGACCTGCTTCAGGAGCTGGTCGGTTGAGAGAGGTGGCAGGT
AGGAGAGGGTCTCGAACTTCTTGTTGCCCTCCGCCGGCCACACCTGAGCAACGACACTCTCATATCAGTTCCTAAACTTCCTATTGAGTTGTATTATTT