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Detailed information on CNT30520803


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690383Setaria italicaOryza sativa21.2214.0391.4994forward
CNT30672671Setaria italicaSetaria viridis44.0248.1588.21195forward
CNT30286278Setaria italicaTriticum aestivum21.2232.1994.6894forward
CNT30383152Setaria italicaTriticum turgidum21.2215.0494.6894forward
CNT30552437Setaria italicaOryza glaberrima21.2222.2791.4994forward
CNT30438687Setaria italicaAegilops tauschii18.9624.4989.2984forward
CNT30255378Setaria italicaAvena sativa20.0920.9493.2689forward
CNT30655558Setaria italicaTriticum dicoccoides21.2224.7494.6894forward
CNT3015104Setaria italicaZea mays20.5427.5893.4191forward
CNT30678966Setaria italicaTriticum urartu21.2218.3294.6894forward
CNT30719808Setaria italicaTriticum spelta21.2222.0794.6894forward
CNT30595633Setaria italicaOryza meridionalis21.2228.9291.4994forward
CNT30369401Setaria italicaOryza glumipatula21.2221.3291.4994forward
CNT3099956Setaria italicaOryza rufipogon21.228.7791.4994forward
CNT30574749Setaria italicaOryza barthii21.2224.8791.4994forward
CNT30115687Setaria italicaOryza nivara21.2221.1791.4994forward
CNT30556918Setaria italicaPanicum hallii69.5399.6884.09308forward

Expression of CNT30520803

Peptides detected in this lncRNA

>peptide 1 (54 aa)
QSNRCRQSPNTQLVLKHIHILKVACTRRTHKIDDGIVDHHRHVQFRQPQLRHGR*

>peptide 2 (36 aa)
MQAVTEHTASAETHTYIKGGMHEEDTQDRRRHRRSP*

>peptide 3 (79 aa)
MMMDGAVGKILFSRRCYYISMLLGGASPSSSRSMAPPPQLQLQQEQPQLVPHLQPAPHPQLPPQQDMLMITSREAGTGA*

>peptide 4 (64 aa)
MAQLARSYLVDAATILVCCWGALLLPPRAPWRRRLSCSCSRSSRSWCRTCSQRRTRSCRRSKTC*

Sequence

>CNT30520803
CACAGAGTAACAGATGCAGGCAGTCACCGAACACACAGCTAGTGCTGAAACACATACATATATTAAAGGTGGCATGCACGAGGAGGACACACAAGATCGA
CGACGGCATCGTCGATCACCATAGGCACGTTCAGTTCAGACAACCCCAGCTGAGACACGGCAGATGATGATGGATGGCGCAGTTGGCAAGATCTTATTTA
GTAGACGCTGCTACTATATTAGTATGCTGCTGGGGGGCGCTTCTCCTTCCTCCTCGCGCTCCATGGCGCCGCCGCCTCAGTTGCAGCTGCAGCAGGAGCA
GCCGCAGCTGGTGCCGCACTTGCAGCCAGCGCCGCACCCGCAGTTGCCGCCGCAGCAAGACATGCTGATGATCACGAGCAGGGAAGCAGGAACTGGTGCT
TGAAGAAGGTGTAGTAGTGCTTCTTGTGCTCTGCTTCGCTTGT