Detailed information on CNT30520789


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FR99|ACCO_MUSAC, E-value = 3e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672335Setaria italicaSetaria viridis13.9836.7995.73117forward
CNT30283720Setaria italicaTriticum aestivum26.1646.0193.15219forward
CNT30590747Setaria italicaMusa acuminata28.244.785.17236forward
CNT30656031Setaria italicaTriticum dicoccoides30.5926.0493.36256forward
CNT30470461Setaria italicaSaccharum spontaneum47.0773.3793.91394forward
CNT30679210Setaria italicaTriticum urartu12.1926.4995.1102forward
CNT30349942Setaria italicaEragrostis tef49.9434.8692.11418forward
CNT30364964Setaria italicaSorghum bicolor20.5510.6188.37172forward

Expression of CNT30520789

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSSQSMSSTGATASPRCSASTSASSVRTGSDALNPASRMR*

>peptide 2 (83 aa)
MAPASGCTSVHWPSLSTSRPPTWSSWYSRMTPPASVCARRPVTRFSSMASMTRPASFLSSARYSRMVSLNSGGFDGHWLPSWM*

Sequence

>CNT30520789
GAACGGAGGTAGTATTTCAAAGGCCATCAACTATACTCGACAAATAATAACCAGTAATTGAGGTTTAATCACCTTAACAACTACTAGATACTCTGGCAAA
GGTTTAAGCCGCCGGAGATGACTTTGGCGCCTTGACGGCCTCGAATCTGGGCTCCTTGGCCTGGAATTTCTGCTTGGCGTACACGTCCATGTAGTCGCCG
AAGACGTACTTGGGGTAGGCCTCGCCGCCGGCCACCGCCGCCGGCGAGATGGTGGCCTCGTTGGCCGGGTTGTAGAAGGATGCGATGGAGCGGCGGTTGG
CGTCGCGCATGGGGAGGACGCGGTGCCACGCGCTGCGGTAGCGGCCGTTGCTGAGCACCTCGATCTGGTCGCCGGTGTTGACGACGATGGCGCCGGCGAG
CGGCTGCACGTCCGTCCACTGGCCGTCCTTGAGCACCTCCAGGCCGCCGACCTGGTCGTCCTGGTACAGCAGGATGACGCCGCCGGCGTCCGTGTGCGCG
CGGAGGCCCGTGACGAGGTTCTCGTCCATGGCCTCCATGACGCGCCCGGCGAGCTTCCTCAGCTCGGCGCGGTACTCGCGCATGGTCTCCTTGAACTCCG
GCGGGTTCGACGGCCACTGGCTGCCGTCGTGGATGTAGAAGATGTCCTCCCAGTCCATGTCGTCCACCGGCGCCACCGCCTCGCCGCGCTGCTCGGCCTC
CACCAGCGCCTCCAGCGTGCGCACCGGCTCCGACGCCTTGAACCCGGCCTCCCGGATGCGGTAGCACTCGGAGCACACCTTCTTCACGCGCTCAAGAAGC
TCCAGCGGGATGCCATGGTTCACAAGCTGCAGTTATT