Detailed information on CNT30520781


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 6e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673320Setaria italicaSetaria viridis62.7373.86100404forward
CNT30698134Setaria italicaQuercus lobata22.057.6282.39142forward
CNT30712288Setaria italicaGlycine max22.0524.6185.21142forward
CNT3042792Setaria italicaPrunus dulcis22.3639.0282.64144forward
CNT3084834Setaria italicaVigna radiata16.6127.7985.98107forward
CNT30483616Setaria italicaChara braunii16.152682.69104forward
CNT3027985Setaria italicaTheobroma cacao21.5825.682.73139forward
CNT30104607Setaria italicaOryza rufipogon16.7730.0895.37108forward

Expression of CNT30520781

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPPKKKPPVNLAQPSAVCSLSASFLRPVSVSGPTRR*

>peptide 2 (58 aa)
MAFTVKRGRLVSAAPERPLGLECTKPLFITWLAMGAYAVAISTSACLSRTGLFLPAKW*

Sequence

>CNT30520781
CCAAGAACGAAGAGTGTACAAATACAACACCTAGTCATTAATTTTATCCCCAAGTAAATTAACTCCATCCAAGTAAGAAATCAACAGTTCAAGTTCCAAG
TTACTTGAAGTACATTTATACACGTGCTCACTGCTCAATCAACGACCTCATCGCCTACCCATGCACGCACACGCATGTAGAGAGGACGTCTACTTGAAGT
AGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGACCACGCCGGAGATGCCGCCGAAGAAGAAGCCTCCGGTGAACTTGGCCCAGCCGTCGGC
GGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCGGTGAGCGTGAGCGGGCCCACGAGGAGGTAGCCGTGCGCAAGCCCGACCTCGATGCCGCGGAGCAGC
GGGCTCACGGCGGTGCGGTAGGCCGGGAGGTTGGAGAGGTACCAGGCTGGATGGCCTTCACGGTGAAGCGGGGCCGCCTGGTCAGCGCAGCGCCTGAAAG
GCCCCTGGGCCTCGAGTGCACCAAGCCGCTCTTCATCACCTGGCTCGCCATGGGAGCGTACGCGGTAGCCATCTCGACCTCTGCCTGTCTCTCACGAACA
GGGCTCTTCCTTCCTGCAAAATGGTAGAAGAGGTCTCCTTGTAT