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Detailed information on CNT30520774


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 5e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672379Setaria italicaSetaria viridis41.42103.7996.35466forward
CNT30182270Setaria italicaSecale cereale29.8760.8788.99336forward
CNT30294278Setaria italicaTriticum aestivum28.5374.4890.65321forward
CNT304588Setaria italicaZea mays30.6726.7490.72345forward
CNT30578384Setaria italicaOryza barthii12.3635.4697.12139forward
CNT30582394Setaria italicaEchinochloa crusgalli32.4497.8691.23365forward
CNT30557050Setaria italicaPanicum hallii15.1144.7498.24170forward

Expression of CNT30520774

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSGLEVMGVSRLPMKGSPLMGCTTWYVVCSRTTDSFYHQSQRILFDHTKIYY*

>peptide 2 (37 aa)
MPPKKKPPVNLAQPSAVCSLSASFLRPVSVSVGAVDG*

>peptide 3 (90 aa)
MLPIAKSQIDQNYKKDASLFRCSVDPLTFSGWMAFTVKRGRLVSAAPERPLGLECTKPLFITWLAMGAYAVAISTSACLSRTGLFLPAKW*

>peptide 4 (31 aa)
MFRASNCISNFQSCEIDQNESHKMTELKSRF*

Sequence

>CNT30520774
GGCCCAAGAACGAAGAGTGTACAAATACAACACCTAGTCATTAATTTTATCCCCAAGTAAATTAACTCCATCCAAGTAAGAAATCAACAGTTCAAGTTCC
AAGTTACTTGAAGTACATTTATACACGTGCTCACTGCTCAATCAACGACCTCATCGCCTACCCATGCACGCACACGCATGTAGAGAGGACGTCTACTTGA
AGTAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGACCACGCCGGAGATGCCGCCGAAGAAGAAGCCTCCGGTGAACTTGGCCCAGCCGTC
GGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCGGTGAGCGTGAGCGTGGGCGCCGTGGACGGGTAGCCGTGCGCAAGCCCGACCTCGATGCCGCGG
AGCAGCGGGCTCACGGCGGTGCGGTAGGCCGGGAGGTTGGAGAGGTACCAGGCGATGAGCGGGCTGGAGGTGATGGGCGTCTCCAGGCTGCCGATGAAGG
GGTCGCCGTTGATGGGCTGCACCACCTGGTACGTTGTCTGCTCAAGAACAACAGACAGTTTCTATCATCAGAGCCAAAGAATTTTGTTTGATCATACAAA
GATATATTATTGAATTGCTAATGTTCAGAGCATCAAATTGTATATCCAATTTCCAGTCCTGTGAGATAGATCAAAATGAATCACACAAGATGACTGAACT
GAAATCAAGATTCTAGCAGCAGCACACATGCAAAGAACTGATCGATTTGGAAGCATTTTGAATGAAATTGATAATTCATGTTGCCTATAGCCAAGAGCCA
AATCGATCAAAACTATAAAAAAGATGCATCACTATTTCGTTGCTCAGTAGATCCACTGACCTTCTCAGGCTGGATGGCCTTCACGGTGAAGCGGGGCCGC
CTGGTCAGCGCAGCGCCTGAAAGGCCCCTGGGCCTCGAGTGCACCAAGCCGCTCTTCATCACCTGGCTCGCCATGGGAGCGTACGCGGTAGCCATCTCGA
CCTCTGCCTGTCTCTCACGAACAGGGCTCTTCCTTCCTGCAAAATGGTAGAAGAGGTCTCCTTGTATCGGCCCAATTAAAGTTTGTGATCTTTAGATCCT
GCAGGGGGTGTGTGAGAAGATCTGT