CANTATAdb - search

Detailed information on CNT30520765

BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30564256	Setaria italica	Actinidia chinensis	30.07	52.49	88.54	611	forward
CNT30132437	Setaria italica	Lolium perenne	43.75	73.96	87.74	889	forward
CNT3011166	Setaria italica	Zea mays	43.65	62.73	93.01	887	forward
CNT30480841	Setaria italica	Arabidopsis halleri	19.54	63.93	88.16	397	forward
CNT30580076	Setaria italica	Echinochloa crusgalli	19.83	30.46	92.06	403	forward

Expression of CNT30520765

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSFTATFFTLNPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMIPVSTRPTGTVPIPPILYTS*

>peptide 2 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

Sequence

>CNT30520765
CCCAGGCACTTGCATTGAACAATCGCAGGAGCACATCAATCTCAGGTAATTTAAGTTTTGCCAAATCCAAATATAAAAACTGTATGTAAACATCAAACAG
ACCGAGGACACATTGCCAGCTGAGATTAATAGTTCACGAGATAACAGCAATGGCCATAGACAAAACTTAAGTGATATTATAGCATCTAGGCATGCCAAAA
GCAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTGCAGCCTTAGTCACCTTGGCGCCCGTTGGGTCCTTCTTCTCCACGCTCTTGATGAC
TCCAACAGCAACCGTTTGCCTCATGTCACGGACAGCAAAACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTTAGTGGGAATCATC
TTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCGGATCGTCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGA
CAGCGATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGC
CTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACGAACCCACGCTTGAGATCCTTCACAGCAACGTTCTTCACGTTGAACCCAACGTTGTCACCAGGA
AGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACTGACTTCACCTCAGTAGTCAGGCCAGTGGGACCAAAGGTGACAAGCATACCAGGCTTGATGATAC
CGGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGAAGACGGAGGGGCTTGTCCGAAGGCCTCTTGGGCTC
GTTGATCTGGTCAAGAGCCTCAAGCAGGGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATTGGG
ACGAAGGCAATCTTGTCAGGGTTGTATCCCACCTTCTTCAGGTAGGAGGAGACTTCCTTCACAATCTCATCATAACGGGCCTTGGAGTACTTGGGAGTGG
TGGCATCCATCTACAAACAGAATAGAAACATAAGATCATCATTAGCTTATGGAAGAGATCATAGCAAACACTAAGCACGGAAGAACATTACATCAATCAA
AAACTGCTACACTGCACTTCTTTAGGGAATAAACTTGTTTAAAGTGGCATCTCAAAGTAAACAAATATAAATAGGTAGATCATCAAATATCACATGCATA
TCCAAGTTAGCTAGTGCAAGCTATAAGAACTATAAAGCAAGTACATATACAGTCCTCATAAGGTATGTCAACACATCCTATTACTAAATTGTAGCACAGC
ACATTAAGTAACAATACCAATCATATGAAGACATTTAAATGAGGCAACAAGTGCTTGCATTCTGTATGCAATACAAGTATATATGCGAGAACAGATTTCA
TTATAATTAAATGATGCAACTATTATTAGTCTCAACTTGTCTCAAACGTATCCAAGTTAGCTAGTGCAGGGTGTAACACAAAATTGCAAGTCCAAAATAC
AGATTTCACAAGGTCTATGTCAATGCATCCTATCCTATCATGAAATTGTAACACAGTACATTAAGTTAAAAAACAATAACAATCATGTGAATAAATTTAA
TGATGCAACACTTGTGCTTCCAATAACTCCAAAAATTGCTCAAAACAGTTTTAACAACAAACTCATAACAAAATTATAGAAAATATTCTATAACTCAATG
CAATTTAATGAATGGGAACTATTACGATCTAGGATAAATATGTAGGAAAAAGATGGTTATTTAATTGAAGCAATAGCAGCTTATTGCACTTTGAAAAGTT
CAGTACATAAAATTGTAATCAAAATGTAGAGTATCAAACTTACAAAGAAACAGACAGTACCATTGAGTGCAAACGAATATAGCTGGACTACTGACATGCG
TATCTAAGAGCATCTCAGATCATGAACAAAAG