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Detailed information on CNT30520764


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 9e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672378Setaria italicaSetaria viridis98.2176.0799.83604forward
CNT30535656Setaria italicaEucalyptus grandis30.2437.281.72186forward
CNT30464658Setaria italicaSaccharum spontaneum31.5421.1683.51194forward
CNT30557165Setaria italicaPanicum hallii48.9469.6890.03301forward

Expression of CNT30520764

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFSKPMVALLMGTHARPIVTEAFRWGKMEIIKRC*

Sequence

>CNT30520764
CATTTACGTAAGTAAAACAACCATGTTATAATGTTCCAACGAATTGGCAATCTAGTGGTACATTGTCGTATGAATATGATCGCTGTGTATACATTCGTGT
AAATATATCACTATGTGCAAAGGTATAGCCGGAGCTATGTACCATGCATTCACATGTTTAGCAAGCCAATGGTAGCATTGCTCATGGGCACGCATGCTCG
CCCAATAGTTACAGAAGCGTTCAGATGGGGAAAAATGGAGATAATCAAGCGGTGTTGAACTGAGACGGACAGGTATTTAAGCTTTTTATTTGGCGCCGCC
GGTCTACTCGCTGCCCGGGGGCTTGTAGGCGATGAACATGACGCACTGCACCTGCTTGATGTTGTCGAAGCCGATGATACGGATGTAACAGTCGGGGTAG
GCCTTCTTGCACTCCTCGAACTCAGCGTACACCTGGGTGGCCTCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGCCCGTCGTAGTAAC
AGGGAGACGTGCTGTTCTCACGATAGACGAACCCGATCTTGCTGAACTCGAGGCAGGGGATCCAGTTCTTCCGGATCAGGTAGTCGATCTGCTTCAGGAC
CTCGAGGTGCGTCAT