CANTATAdb - search

Detailed information on CNT30520718

BLAST search results

BLAST vs Swiss-Prot:
sp|O04023|SRC2_ARATH, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30363020	Setaria italica	Sorghum bicolor	10.75	30.93	91.44	257	forward
CNT30370891	Setaria italica	Oryza glumipatula	12.72	32.86	84.21	304	forward
CNT30103068	Setaria italica	Oryza rufipogon	13.14	32.57	89.81	314	forward
CNT30580658	Setaria italica	Echinochloa crusgalli	18.2	49.1	93.33	435	forward
CNT30496500	Setaria italica	Digitaria exilis	18.16	23.26	92.17	434	forward

Expression of CNT30520718

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MQILCGPGYHVGRLIYILQCSDPRRTISGLK*

>peptide 2 (39 aa)
MRARISCGQIDLYFAVLRSSENDLRSQITTFLNTTQERT*

>peptide 3 (45 aa)
MRRRHSRRRSRSSRHCRSRRGHGCRAARTPPAPGTGWGRSTWPAP*

>peptide 4 (59 aa)
MATRTSRRPCGLPDGRLRRRLREAFPPIPASSRTSRSGRRAEPTSGLTPSAALAWTTSR*

Sequence

>CNT30520718
CGTGCTGATCCACCCTGGTTCTGGGGCTTGGAGGCCGGGATCGGGTAGTGCAGGAAGAAGAAGGGTGGGGAGGCAAATTGGAGGGTAGCAACACAAGAGG
CAAATATGACAATGTCCATCTCATAAAGCAAGGGTATCCAAACAGCTTAGACTAAAAATAAGCAACTCCAAATAAACACCTTTGCATCTTACCTTTCATC
CAAAGAGGGCCTGAGAGCAACTCAAACCAACCAGGCCCTTTTTCATGAGCTCCAAAAGGGCCTGAGAGCTGTCAGTAGTGTCGGGGCCAGCTGTCACATG
ATAGCATTTCCATTGCAAATAGTGTTTCATACGTGGTGGTGAGTCAGGCCTTGTTTAGTTGGCCAAATTGGGAGGTGCCAAATTACTGTGCTGGCACTGT
AGCACACTGTAGCGTTTCGTTTGTATTTGTGAATTATTGTCCAAACATTAACTAATTAGGCTCAAAAGATTCGTCTCGCAAAGTACAACAAAACTGTGCA
ATTAGTTTTTAATTTCATCTACATTTAGTACTCCATGCATATACCGCAAGTTTGATATAATGGAGAATCTTCTTTTTGTATAGTGCCAATCGTTGGGAGT
TGGGGGTGAAGCGTAAAAGTGGCATCAGTACTTTGCATCCTACCTTTCATCCTGTTTACCCAACGTCTGAAGACGAAAAGGTAATGGGCACGGGGCCACA
CATCTCCTTCTCGTCTCTCTAACCAAGCAAGGGATCGGGGTACGGGACCCACCCCACCCCCACCATAAAGAAAAAGAGGACAGGTCCTCTCACTCCCACT
GGGGCGTAGAATCATCGTCCTTGATCCGTCAGAGCGTCTCCGGCAGGCATTAAAGAATTGGGAGGGAGAGCGGTCGTCAACGCCGGCGCCGGTGGAGCAA
ATATCTTATTGCCGTCGTTGCTGATCAACACAGATACTACTCACGAAGCTGCTGTACCAGGAGGCATCCATGCAGATACTATGCGGGCCAGGATATCATG
TGGGCAGATTGATTTATATTTTGCAGTGCTCAGATCCTCGGAGAACGATCTCAGGTCTCAAATAACAACATTCTTAAACACGACGCAGGAAAGAACTTGA
AGAACAGGATTTGGTTTGCCGATTCAGACACACATAGGAAACCATGGCTATCATGCGCGGCGGATCGATTAGCACAGCAGCCGGCGAAATGACTGGATCC
GCGTCCGGATCCGATCAGTAGTCGTCGTCGTAGCCGCCGCCGTAATCGTCGTAGCCGCCCCCGTAGCCGCCGCCGCCGCCGTACGAGTCCTCCCTCTCCA
GCTTCTCCTCCACCCTCTCCGAGACGCGCTCCTCCAACTTGTTCTCCAGCAAGCTCGCCCCGCCGGCCAGCGCCAGGCCCCCGAGCACGCCCGCCGCCGC
GCCGACGGCCAACCCCGTCCCCATCCCCATCTTGTTGCTCTTCTTGCCGTCGGCGCCGGCGACGGGAGCAGCAGCGCCGTACGCGGGCGCGGCGCCGCTG
TACGCAGCGGGTGCCGCGGCGCCGTACGCCGCGGTGGCAGCGGGAGGAGCACCGTACGCCGGCTGCGGCGGAAGCGGCGCGGAGCCGTAGGCCGAAGGGT
ACCCTGCCGGGGGCGCCGCGGCGTAAGGCTGCGCGGCGCCGTAGCCACCCGATCCGTATGCGCCGCCGCCATAGCCGCCGCCGGAGCCGTAGTAGCCGCC
ACTGCCGGAGCCGTAGGGGTCACGGGTGCCGTGCTGCGCGTACCCCGCCGGCGCCGGGTACGGGTTGGGGTCGTAGTACCTGGCCGGCTCCTTGATGGCG
ACGCGAACGTCGAGGCGGCCGTGTGGCCTCCCCGATGGCCGCTTGAGGCGGAGGTTGCGGGAGGCCTTCCCCCCGATCCCCGCGTCGTCGAGGACGTCGC
GGAGCGGGAGGCGCGCTGAGCCGACGAGCGGCTTGACCCCCTCGGCGGCGTTGGCGTGGACGACGTCGAGGTAGAGGACGGCGTCGTCGAGGCGGGAGGA
GGGCGGGAGCGGGACGAGGAGCTTCTCGTCCCAGGAGGGGCTCTCGCCGTTGTCGAGGTCGACGCGGGTGGAGCACTTGGCGCCGGAGTCGACCCAGACG
ACGGCGTACGGCTTGAGGTCGCCGTTGCGCCAGTTGACGTTCTTGAGGTCCCGGGCCGAACCGACGGTCACCTCCACCTCGTAGCGGGACCCCATCGCCT
CTCCGGCCGGCGGTGGCAGGAAGGGCAGACGGAGGGGAAGCTTGTGCCTTTTGCTTTGCTAGATTAGCGACTGGATGGAGGAACGGGGAGGACAGCGACC
TGTATAAATAGGGACGGGACGTCTCGGGTTGGGGTTTGGGTTGGGTTCCACGGCACCGCGGGGAACTGCACGCGGGGGGACGGGAAAGGG