Detailed information on CNT30520681


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30306352Setaria italicaTriticum aestivum20.6414.1585.7177forward
CNT30398756Setaria italicaTriticum turgidum20.644.1385.7177reverse complement
CNT30553785Setaria italicaOryza glaberrima20.6421.2185.7177forward
CNT3067565Setaria italicaLeersia perrieri21.4511.4886.2580forward
CNT30596221Setaria italicaOryza meridionalis20.6415.187.0177forward
CNT30109967Setaria italicaOryza longistaminata20.9118.5785.978forward
CNT30101607Setaria italicaOryza rufipogon20.649.6185.7177forward
CNT30576506Setaria italicaOryza barthii20.6415.485.7177forward
CNT30496153Setaria italicaDigitaria exilis31.125.1693.97116forward

Expression of CNT30520681

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MTINTMMVAIISILLLTLVVVSLAPPSPITSSNNVRKSRRSIIVHGCNNNCSMACCYCNIQRSPPVCERCCG*

>peptide 2 (54 aa)
QVQYRAIISNRMMIFTSCQAEDDYQHHDGSHHLYPSANPGGCFTSTTFTNYKLK*

>peptide 3 (48 aa)
MSENLDAASSYTVATTTAVWPAATATFKDRHQFVKGAVDNLNSMKNAA*

Sequence

>CNT30520681
GTCAGGTGCAATATAGAGCCATCATCTCAAACCGGATGATGATATTCACCAGCTGCCAAGCTGAAGATGACTATCAACACCATGATGGTAGCCATCATCT
CTATCCTTCTGCTAACCCTGGTGGTTGTTTCACTAGCACCACCTTCACCAATTACAAGCTCAAATAATGTCCGAAAATCTCGACGCAGCATCATCGTACA
CGGTTGCAACAACAACTGCAGTATGGCCTGCTGCTACTGCAACATTCAAAGATCGCCACCAGTTTGTGAAAGGTGCTGTGGATAATTTGAACTCCATGAA
GAACGCGGCATGAACAATATACATGTTTTCATTTATTTGTTCCCCACAACGATGAAGCAGCGCTTGATTTCAT