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Detailed information on CNT30520655


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 1e-45

BLAST vs NONCODE:
NONZMAT000139, E-value = 6e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671877Setaria italicaSetaria viridis759392.47186forward
CNT30180108Setaria italicaSecale cereale81.4592.2492.08202forward
CNT30387547Setaria italicaTriticum turgidum44.7640.5192.79111forward
CNT30658643Setaria italicaTriticum dicoccoides86.6948.5392.09215forward
CNT30680880Setaria italicaTriticum urartu86.6941.5992.09215forward
CNT30341741Setaria italicaEragrostis tef88.7136.391.36220forward
CNT30596661Setaria italicaOryza meridionalis91.5363.4192.07227forward
CNT30104991Setaria italicaOryza longistaminata88.3192.4192.24219forward
CNT30102585Setaria italicaOryza rufipogon88.3162.2291.78219forward
CNT30556620Setaria italicaPanicum hallii94.3523.7892.31234forward

Expression of CNT30520655

Peptides detected in this lncRNA

>peptide 1 (81 aa)
GMDVHLHQGRIFQRWLSPLAHSQSTISVPSWTPPWALSPWKASKLRRVLLTMRMQRKPLPMSLLSVHSTDASSSAGLKGTSF

>peptide 2 (44 aa)
AWMYTYTRGGSSSAGCRPWPTPRARSRCRRGRRRGPCRRGRRRS*

>peptide 3 (81 aa)
WHGCTLTPGEDLPALVVALGPLPEHDLGAVVDAAVGLVAVEGVEVEAGVVDHADAAEALADVLALRPQHRRVLLGRVEGHQL

Sequence

>CNT30520655
TGGCATGGATGTACACTTACACCAGGGGAGGATCTTCCAGCGCTGGTTGTCGCCCTTGGCCCACTCCCAGAGCACGATCTCGGTGCCGTCGTGGACGCCG
CCGTGGGCCTTGTCGCCGTGGAAGGCGTCGAAGTTGAGGCGGGTGTTGTTGACCATGCGGATGCAGCGGAAGCCCTTGCCGATGTCCTTGCTCTCCGTCC
ACAGCACCGACGCGTCCTCCTCGGCAGGGTTGAAGGGCACCAGCTTCA