Detailed information on CNT30520562


BLAST search results

BLAST vs Swiss-Prot:
sp|P42051|PSAK_CUCSA, E-value = 2e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694964Setaria italicaOryza sativa26.5618.3691.6119forward
CNT30671460Setaria italicaSetaria viridis46.2151.1199.03207forward
CNT30289849Setaria italicaTriticum aestivum33.9337.2592.11152forward
CNT30436322Setaria italicaAegilops tauschii32.1434.0492.36144forward
CNT30242614Setaria italicaAvena sativa31.739.7895.77142forward
CNT30659915Setaria italicaTriticum dicoccoides33.9341.8791.45152forward
CNT3059741Setaria italicaArabidopsis lyrata37.9553.2979.41170forward
CNT30611008Setaria italicaArabis alpina40.1867.9280.56180forward
CNT30339854Setaria italicaEragrostis tef20.3124.7398.991reverse complement
CNT30325346Setaria italicaAsparagus officinalis35.0433.0584.71157forward
CNT30102407Setaria italicaOryza rufipogon45.5458.7994.61204forward
CNT30581501Setaria italicaEchinochloa crusgalli35.0435.3696.82157forward
CNT30118070Setaria italicaOryza nivara25.4520.3992.11114forward

Expression of CNT30520562

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MFIGTRRCMRAQRMHTHAGYIGGGASDRQPNKHFSR*

>peptide 2 (75 aa)
MICPSTMPTPMMWPTAPQASVSASVNPAGSPVCSPESRDSSFSPAVAFRFADGASPNRPANSISVVDSTMICHHAP

Sequence

>CNT30520562
GGAATTTGAACTCTCTTTGAAGTTTCTGAAGATTTGTTCCATGAAAAAAAGAAGTACGAACGACGTGGGTTACTGAAGCTGATAGGCTCTGGGGCCAAAA
GCAGCAGCAAGCTATGTTCATTGGGACGAGACGATGCATGCGCGCACAACGAATGCACACGCACGCAGGTTACATAGGCGGCGGCGCGAGCGATAGGCAG
CCAAACAAACACTTCAGCCGATGATCTGCCCGAGCACGATGCCGACGCCGATGATGTGGCCGACGGCGCCGCAGGCCAGCGTGTCGGCGAGCGTGAACCC
GGCGGGGTCGCCGGTCTGCAGCCCGGAGTCGCGGGACTCCAGCTTCAGCCCCGCCGTCGCCTTCCGGTTCGCCGACGGCGCCAGCCCGAACCGCCCCGCG
AACAGCATCAGTGTCGTCGACAGCACCATGATCTGCCACCATGCCCCA