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Detailed information on CNT30520559


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671973Setaria italicaSetaria viridis11.1263.45100151forward
CNT30554727Setaria italicaOryza glaberrima16.228.8790.91220forward
CNT30452884Setaria italicaSaccharum spontaneum30.4967.8788.89414forward
CNT30596713Setaria italicaOryza meridionalis15.6838.887.32213forward
CNT30103385Setaria italicaOryza rufipogon22.0948.9490.67300forward

Expression of CNT30520559

Peptides detected in this lncRNA

>peptide 1 (64 aa)
LLPSLLINTDTTHEAAVPGGIHADTMRARISCGQIDLYFAVLRSSENDLRSQITTFLNTTQERT*

>peptide 2 (45 aa)
MRRRHSRRRSRSSRHCRSRRGHGCRAARTPPAPGTGWGRSTWPAP*

>peptide 3 (35 aa)
LIAVVADQHRYYSRSCCTRRHPCRYYAGQDIMWAD*

>peptide 4 (31 aa)
MQILCGPGYHVGRLIYILQCSDPRRTISGLK*

Sequence

>CNT30520559
CTTATTGCCGTCGTTGCTGATCAACACAGATACTACTCACGAAGCTGCTGTACCAGGAGGCATCCATGCAGATACTATGCGGGCCAGGATATCATGTGGG
CAGATTGATTTATATTTTGCAGTGCTCAGATCCTCGGAGAACGATCTCAGGTCTCAAATAACAACATTCTTAAACACGACGCAGGAAAGAACTTGAAGAA
CAGGATTTGGTTTGCCGATTCAGACACACATAGGAAACCATGGCTATCATGCGCGGCGGATCGATTAGCACAGCAGCCGGCGAAATGACTGGATCCGCGT
CCGGATCCGATCAGTAGTCGTCGTCGTAGCCGCCGCCGTAATCGTCGTAGCCGCCCCCGTAGCCGCCGCCGCCGCCGTACGAGTCCTCCCTCTCCAGCTT
CTCCTCCACCCTCTCCGAGACGCGCTCCTCCAACTTGTTCTCCAGCAAGCTCGCCCCGCCGGCCAGCGCCAGGCCCCCGAGCACGCCCGCCGCCGCGCCG
ACGGCCAACCCCGTCCCCATCCCCATCTTGTTGCTCTTCTTGCCGTCGGCGCCGGCGACGGGAGCAGCAGCGCCGTACGCGGGCGCGGCGCCGCTGTACG
CAGCGGGTGCCGCGGCGCCGTACGCCGCGGTGGCAGCGGGAGGAGCACCGTACGCCGGCTGCGGCGGAAGCGGCGCGGAGCCGTAGGCCGAAGGGTACCC
TGCCGGGGGCGCCGCGGCGTAAGGCTGCGCGGCGCCGTAGCCACCCGATCCGTATGCGCCGCCGCCATAGCCGCCGCCGGAGCCGTAGTAGCCGCCACTG
CCGGAGCCGTAGGGGTCACGGGTGCCGTGCTGCGCGTACCCCGCCGGCGCCGGGTACGGGTTGGGGTCGTAGTACCTGGCCGGCTCCTTGATGGCGACGC
GAACGTCGAGGCGGCCGTGTGGCCTCCCCGATGGCCGCTTGAGGCGGAGGTTGCGGGAGGCGCGCTGAGCCGACGAGCGGCTTGACCCCCTCGGCGGCGT
TGGCGTGGACGACGTCGAGGTAGAGGACGGCGTCGTCGAGGCGGGAGGAGGGCGGGAGCGGGACGAGGAGCTTCTCGTCCCAGGAGGGGCTCTCGCCGTT
GTCGAGGTCGACGCGGGTGGAGCACTTGGCGCCGGAGTCGACCCAGACGACGGCGTACGGCTTGAGGTCGCCGTTGCGCCAGTTGACGTTCTTGAGGTCC
CGGGCCGAACCGACGGTCACCTCCACCTCGTAGCGGGACCCCATCGCCTCTCCGGCCGGCGGTGGCAGGAAGGGCAGACGGAGGGGAAGCTTGTGCCTTT
TGCTTTGCTAGATTAGCGACTGGATGGAGGAACGGGGAGGACAGCGACCTGTATAAAT