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Detailed information on CNT30520536

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696108	Setaria italica	Oryza sativa	37.76	17.68	88.77	276	forward
CNT30554882	Setaria italica	Oryza glaberrima	37.76	27.01	82.25	276	forward
CNT30103503	Setaria italica	Oryza rufipogon	20.66	14.06	95.36	151	forward
CNT30580794	Setaria italica	Echinochloa crusgalli	67.85	29.52	90.93	496	forward
CNT30496207	Setaria italica	Digitaria exilis	37.21	12.23	96.69	272	forward
CNT30117556	Setaria italica	Oryza nivara	27.5	11.8	93.53	201	forward

Expression of CNT30520536

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSNCWWGRRMTWRLRRTSWRPSWMRRCSGRAAGAWRRRRRGAGRGRRRCRGS*

>peptide 2 (36 aa)
MFWQSCWSLASTETWSGPREAALSGKLRRAASPRRR*

Sequence

>CNT30520536
CGTTAAGCTTCTGCTGCTGTAGTAGTAGTAGGAGCCAAGAAGGAATGGCGGGTGGTTAATTGGCGGCGAGGAGGGAGTCCCAGTCGATCTCGTACGACGG
GTACTTGGTGAGGGCGAAGCCGGCGGCCTCGTCCCACGGTGCCTCGCTGAAGTCCAGCTGCTGCATCTCCGGCACCGTCGACTCGGGCGAGGCGGACGGC
GACGGGGACGGACACGAGGACTCGGCGGCGGACTCGAGGCAGGACGAGGTCGCGTCGTCGGAGGACGGCGATGAGCAATTGCTGGTGGGGGCGGAGGATG
ACGTGGCGGCTGCGGCGGACTTCTTGGCGCCCTTCTTGGATGCGGCGATGTTCTGGCAGAGCTGCTGGAGCTTGGCGTCGACGGAGACGTGGAGCGGGCC
GCGGGAGGCGGCGTTGTCGGGGAAGTTGAGGCGCGCCGCGTCGCCGCGGAGGCGGTAGGCGGCCTGGTCGTAGGCGAGCGCTGCCTCCTCGGCGGTGTCG
AAGGTGCCGAGCCAGAGGCGGGCCTGGATGTACTGCATCTGGGCCGGGCTCAGCTGGCCCGCCCCCTCGGCTCCGGCGGCGAACGGGTACCCGCCACCGT
AGGCGGCGGCGTGGTGGAAGGAGAAGGGAGAGGTGGGACTGAGAGGGTGGTGGTGTTGGAGAAGCGGACTGGACCCGTGAGGAGCAGAGGCATCCCGGAT
AAAAGGCTCGAGAGCTCTCATCAGCTCCTCC