Detailed information on CNT30520517


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 4e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30287058Setaria italicaTriticum aestivum25.6522.784.8179forward
CNT30553080Setaria italicaOryza glaberrima38.6443.2792.44119forward
CNT30436477Setaria italicaAegilops tauschii68.5169.4188.63211forward
CNT30658727Setaria italicaTriticum dicoccoides46.7520.8184.03144forward
CNT30446776Setaria italicaSaccharum spontaneum40.9141.0489.68126forward
CNT30680806Setaria italicaTriticum urartu25.6522.7784.8179forward
CNT30721394Setaria italicaTriticum spelta41.2347.5788.98127forward

Expression of CNT30520517

Peptides detected in this lncRNA

>peptide 1 (61 aa)
WDWPSECLMARPVALLTRAKAGMPSSSLTLVLKRMSLYQCWWSSLGLAGASSNSRWRGRRS*

>peptide 2 (52 aa)
VGLAERVLDGEAGGLVDEGEGRHAFLVLDPGAEAHVLVPVLVVILGVGGGEQ*

Sequence

>CNT30520517
GTGGGATTGGCCGAGCGAGTGCTTGATGGCGAGGCCGGTGGCCTTGTTGACGAGGGCGAAGGCCGGCATGCCTTCCTCGTCCTTGACCCTGGTGCTGAAG
CGCATGTCCTTGTACCAGTGCTGGTGGTCATCCTTGGGGTTGGCGGGGGCGAGCAGTAATTCTCGTTGGCGCGGCAGAAGATCTTGAACACCTGGTTGGG
GCCCGACGCCGGGGGAGCCGGCTGGTTGTGGTGGTGGTGCCCGAACCACGACATCTTCGGTTGGCAGGTGTGGAGTGTGAGCTGTGGTGAATTGTGATGA
GGTGCGAG