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Detailed information on CNT30520507


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 7e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672261Setaria italicaSetaria viridis30.6966.9999.43349forward
CNT30453593Setaria italicaSaccharum spontaneum34.6532.794.92394forward
CNT30137714Setaria italicaLolium perenne27.4417.0587.18312forward
CNT30228530Setaria italicaAnanas comosus15.9222.1390.61181forward
CNT30580750Setaria italicaEchinochloa crusgalli39.2324.5393.27446forward

Expression of CNT30520507

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MGWARGPRTEDCAWRCRWRRAWMYCIWAGLSWPAPSAPAANGYPPP*

>peptide 2 (33 aa)
MSNCWWGRRMTWRGPREAALSGKLRRAASPRRR*

Sequence

>CNT30520507
TCCACTAATGCCCGCGCGAGATGTCAAAAATCCCATCTGCGCGACGGCCGTTAAGCTTCTGCTGCTGTAGTAGTAGTAGGAGCCAAGAAGGAATGGCGGG
TGGTTAATTGGCGGCGAGGAGGGAGTCCCAGTCGATCTCGTACGACGGGTACTTGGTGAGGGCGAAGCCGGCGGCCTCGTCCCACGGTGCCTCGCTGAAG
TCCAGCTGCTGCATCTCCGGCACCGTCGACTCGGGCGAGGCGGACGGCGACGGGGACGGACACGAGGACTCGGCGGCGGACTCGAGGCAGGACGAGGTCG
CGTCGTCGGAGGACGGCGATGAGCAATTGCTGGTGGGGGCGGAGGATGACGTGGCGCGGGCCGCGGGAGGCGGCGTTGTCGGGGAAGTTGAGGCGCGCCG
CGTCGCCGCGGAGGCGGTAGGCGGCCTGGTCGTAGGCGAGCGCTGCCTCCTCGGCGGTGTCGAAGGTGCCGAGCCAGAGGCGGGTGCGGTTGCGCGGGAG
GCGGATCTCCGCCACCCACTTGCCCCAGTGCCGCTGCCGCACGCCGCGGTACAGCTTCTGCGGCCGCGGCGGGGTCGGGGCCGCCGCAGACGCCGACGAG
ACCTTCATGGGCTGGGCCCGCGGGCCCAGGACGGAGGACTGCGCCTGGCGCTGCAGGTGGAGGCGGGCCTGGATGTACTGCATCTGGGCCGGGCTCAGCT
GGCCCGCCCCCTCGGCTCCGGCGGCGAACGGGTACCCGCCACCGTAGGCGGCGGCGTGGTGGAAGGAGAAGGGAGAGGTGGGACTGAGAGGGTGGTGTGG
AAAAAGAACCCCTCTTGGCTACCAAACTAGCAACCTAGACTGCTAAAAACCAAGCTGAAGAAGAAATAGCAGATCTGAAGCCCAGGATCTAAAACGTCCC
GGGTCTCTCGCTGTCTGCTCGAGGAAGACGAAACCAAGAAGAACAAGGAGAGGAGGAAGAGGGTCAGGAGAGTGAACTTTACCTGCGACGCGCGAGAACT
CGCTCAGATCTAAGCTTACCTCGCTCGAACTCACTGGAACGGTGGTGGGTGGGCGCTGGATGGATGGGGATTGGGTAGGCGGATTTTGGCTGTGGACGAG
TGGAGATGGGATGGCTGGTGGTGGCTTGGGAGTGTTG