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Detailed information on CNT30520501


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504332Setaria italicaNicotiana attenuata2.9520.785.9271forward
CNT30190473Setaria italicaSecale cereale10.4433.2588.05251forward
CNT30553402Setaria italicaOryza glaberrima5.1223.5294.31123forward
CNT30437070Setaria italicaAegilops tauschii10.1149.1987.24243forward
CNT30139319Setaria italicaLolium perenne13.4427.6186.38323forward
CNT30228928Setaria italicaAnanas comosus4.3726.9294.29105forward
CNT30596194Setaria italicaOryza meridionalis4.8326.6794.83116forward
CNT30370054Setaria italicaOryza glumipatula5.1223.5294.31123forward
CNT30109688Setaria italicaOryza longistaminata4.6621.1394.64112forward
CNT30120694Setaria italicaCitrus clementina4.1240.5782.8399forward
CNT30575194Setaria italicaOryza barthii4.4952.6892.59108forward
CNT30116534Setaria italicaOryza nivara5.1228.4794.31123forward

Expression of CNT30520501

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MASWAIEACEGDPVALCRMLLWMFLNVPASVC*

>peptide 2 (30 aa)
MAWSWLSLAAAGLAGRVQRLACKKWMRVVGV

>peptide 3 (47 aa)
MGRERNPFCLDAFERAKLDILLLLYCYYFPSSPEQRNFFLFACAQTV*

>peptide 4 (37 aa)
MTAAPRLLAGLMPVPVTGMVARWTMNTAKPIGRGAST*

>peptide 5 (56 aa)
LVLVVDDGGAQAPGRVDAGASDGDGGQVDHEHSEADWEGSQHLKFFTIHRGSAKHS*

>peptide 6 (50 aa)
MGRAKAGHGQTSRSVTSPPHAKGMPTTTRLPRFHLATRYTFAPSVALDQR*

>peptide 7 (78 aa)
MAWDTITQGREGRGRTWPSVRALITRQGRLDPTDHVLQWSRGPDQAQLSFLRAPVGPRVYHHHRMLLCRHARWESQPG*

>peptide 8 (61 aa)
MCYSGAAGRTRPSSAFYARRWARVCTTTTGCYCAVMHGGRASQVDGSSKNLEDVKLQRFLQ*

>peptide 9 (86 aa)
MGHNHTREGGEGEDVAERACPHHTTRTTGPDGPCATVEPRAGPGPAQLFTRAGGPACVPPPPDVTVPSCTVGEPARLTGAVKIWRT*

>peptide 10 (78 aa)
MHAPFSREGTGTPNFVSGLWLLARDFTSADEPPPGSSPRHILTGWVARRQAMDRHHVPSPRRLTRKGCPLPLGYPDFT*

>peptide 11 (29 aa)
MPPKAHAMPRMPTPPHASVPATFGSVWCL*

Sequence

>CNT30520501
GCTTGTCCTTGTTGTAGATGACGGCGGCGCCCAGGCTCCTGGCCGGGTTGATGCCGGTGCCAGTGACGGGGATGGTGGCCAGGTGGACCATGAACACAGC
GAAGCCGATTGGGAGGGGAGCCAGCACCTGAAATTTTTCACAATTCACAGAGGGTCAGCAAAACATAGCTGAAAATAAAAACAAGCAAAGGCAATCAGAT
TAGAATTACAGGCAATCAGATTAGAATTACTCGTGCATGCGTCCAAATTCTCGTCACATCATCATGGCCTAACATTTTCCAAACTAAAACAAGATGACAG
GCTACTTCTAAAGCAAGTGGCCAAGCATTTCTCCAAGCAAGTCTGTCAGCGTCAGGAACGATTAGTGGCTAAGAAAAGGAGACCCTCTCGTCATGCATGC
CCCTTTCTCTAGGGAAGGAACTGGAACACCAAACTTCGTTAGTGGCCTCTGGCTTTTAGCGCGCGACTTCACCTCGGCCGATGAACCACCACCAGGGTCC
TCACCACGGCATATTTTGACGGGATGGGTCGCGCGAAGGCAGGCCATGGACAGACATCACGTTCCGTCACCTCGCCGCCTCACGCGAAAGGGATGCCCAC
TACCACTAGGCTACCCCGATTTCACCTAGCCACACGCTACACGTTTGCGCCTAGCGTTGCTTTGGACCAGCGGTGAATACGAATTCTTCAAATTCACTCC
GTGTGTGGTTACGTTTCAGTACGTACCATACGGTGGTCCGTGGAACCGTAGTACACGTTGGAGGATTTCAAGAACCAACGGTACGGTGCTAATAATTCAT
CATGGAGGGGTGAGACGCTAGAGTCTAGAGAGGAGGCTCACATGGCATGGGACACAATCACACAAGGGAGGGAGGGGAGGGGGAGGACGTGGCCGAGCGT
GCGTGCCCTCATCACACGACAAGGACGACTGGACCCGACGGACCATGTGCTACAGTGGAGCCGCGGGCCGGACCAGGCCCAGCTCAGCTTTTTACGCGCG
CCGGTGGGCCCGCGTGTGTACCACCACCACCGGATGTTACTGTGCCGTCATGCACGGTGGGAGAGCCAGCCAGGTTGACGGGAGCAGTAAAAATCTGGAG
GACGTAAAATTGCAGAGATTTCTACAGTAGTACTCCGTAGTAAAATTTCAAGTCTAGAGATAAGGTTGGAGCTGATTAGCCCCGGGTCTCTCTATCTGTA
TTTATTTACTTTACTGTTAGGTCCGGGGAGTCATGGCTAGCTGGGCTATTGAGGCCTGTGAGGGTGACCCGGTTGCGCTCTGCCGCATGCTCCTGTGGAT
GTTCTTGAATGTTCCAGCAAGTGTGTGTTAATAACGGTCATTATCAAGACTACGGAAGGCTTAATGACAGTTCTCCGTGTGTAGTGTACTAACCCCTTGA
AAATTAAGTTGTGATATTTAGAATATTTGGAGCTTAGGCATCCACACATCTCTTTCAACGGTCAATTATTTCTTTCTTTTGGACAATGGTTTAGCTGAAT
TTCAAGCTTTTGTTCCTCTATCTAACAATAAGCAGCCTCGATGAATAACTTGTGTAACTAGGTACAGACTACTCTAAAAAAGACTAGGTGCAGACAAAAT
GAATCGTAAGTGAACCTTTACCTTTCTATCCCCAGCAAAAAAACGTTCTATGGGCCGGGAAAGAAATCCCTTCTGCCTGGACGCCTTTGAAAGAGCCAAA
CTGGATATTCTCTTGCTTTTATATTGTTATTATTTTCCTTCTTCACCGGAACAAAGGAATTTCTTTTTGTTCGCATGTGCCCAAACAGTATAGATGGGCA
AGATTAGAGCATGCTAGCATCGCTTGAGCTCTAATTAAGCTAAGTTCGCACAGACATGAAGTAAAAGAAGCTAATAAGCGAGCAAGCTAGCAGATCGAGA
GAGAGAAATAAATAAAAGAAGAAAAAAGCAGGAGGCCGTGGCGTTGGTCGGGTGCTCACCGGAACGTGGGAGTCGCGGGCGTTGCGCTTGGGGTCGGTGG
CGGAGAAGACGGTGTAGACGAGGACGAAGATCATGCCGCCGAAGGCCCACGCGATGCCGAGGATGCCCACGCCGCCGCACGCGTCGGTGCCGGCCACGTT
CGGGTCCGTCTGGTGCTTGTAACCGATGACGGTGAGCACGGTGATGTAGAGGAAGAGCAGCGTGGCGATGAACTCGGCGATGACGGCGCGGTACAGCGAC
CAGGAACCCAGCTCTGCCGCGTCGATCAGCGGCGCCGGGGGAGGGTCCGTGTAGTCCTTGGCGGCGAACTCGCCGCCGCCGGCGCCGCTCTCGATCACGT
CGTCCTTGCCCATGGCTTGGTCTTGGCTTAGCTTGGCAGCTGCGGGACTAGCCGGCCGGGTGCAGAGGTTGGCTTGCAAGAAATGGATGAGAGTGGTGGG
AGTG