Detailed information on CNT30520471


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671841Setaria italicaSetaria viridis10.7920.8797.9248forward
CNT30165626Setaria italicaPistacia vera29.4436.1985.5131forward
CNT30555775Setaria italicaOryza glaberrima39.127.492.53174forward
CNT30436659Setaria italicaAegilops tauschii32.3624.4994.44144forward
CNT30454026Setaria italicaSaccharum spontaneum35.5117.1694.3158forward
CNT30624183Setaria italicaDaucus carota18.234.6285.1981forward
CNT30680268Setaria italicaTriticum urartu31.4632.2692.86140forward
CNT30720567Setaria italicaTriticum spelta36.1828.891.93161forward
CNT30351418Setaria italicaEragrostis tef39.130.6995.98174forward
CNT30320390Setaria italicaAsparagus officinalis21.576.2690.6296forward
CNT30118009Setaria italicaOryza nivara14.8322.5393.9466forward

Expression of CNT30520471

Peptides detected in this lncRNA

>peptide 1 (31 aa)
VLKSFNFFPFLLQRLKHHYLAYIPEFHNPKT*

Sequence

>CNT30520471
CGTGCTCAAAAGTTTCAACTTCTTCCCATTTCTTCTTCAACGATTAAAACATCATTATCTGGCTTACATCCCTGAGTTTCACAACCCAAAAACTTAGCCG
TATTCACATCCCATTCAAAGAACCTAACAAACCAACCCAAGAACCTATCGAAATCATCGCCTACTTCCCCTGCCAACCACATCGAGGACGGCGGCGAGGT
AGACGGGGGCGCCGGCGCCGACCCTCTCGGCGTACTTGCCGGCCTTGAGGAACCTGGCGATCCTGCCGACGGGGAACTGGAGCCCGGCCTTGGAGCTCCT
GGACGTCGCCTTCTTCGCCGCGCCCGCGCCGATCGCCTTGCCACGGCCCGCCATCTCACCACCCGACGACGACGACGACGACGAAACGGCTTCGCGATGC
AGGGGCGAGGGGAAACGGATGCGGGAGGCTTGGGTGCGAGTCGCG