Detailed information on CNT30520391


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84RL7|PIP21_MAIZE, E-value = 4e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30362596Setaria italicaSorghum bicolor20.2283.7691.52495forward

Expression of CNT30520391

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MCYSGAAGRTRPSSAFYARRWARVCTTTTGCYCAVMHGGRASQVDGSSKNLEDVKLQRFLQ*

>peptide 2 (78 aa)
MAWDTITQGREGRGRTWPSVRALITRQGRLDPTDHVLQWSRGPDQAQLSFLRAPVGPRVYHHHRMLLCRHARWESQPG*

>peptide 3 (78 aa)
MHAPFSREGTGTPNFVSGLWLLARDFTSADEPPPGSSPRHILTGWVARRQAMDRHHVPSPRRLTRKGCPLPLGYPDFT*

>peptide 4 (86 aa)
MGHNHTREGGEGEDVAERACPHHTTRTTGPDGPCATVEPRAGPGPAQLFTRAGGPACVPPPPDVTVPSCTVGEPARLTGAVKIWRT*

>peptide 5 (50 aa)
MGRAKAGHGQTSRSVTSPPHAKGMPTTTRLPRFHLATRYTFAPSVALDQR*

>peptide 6 (47 aa)
MGRERNPFCLDAFERAKLDILLLLYCYYFPSSPEQRNFFLFACAQTV*

>peptide 7 (32 aa)
MASWAIEACEGDPVALCRMLLWMFLNVPASVC*

>peptide 8 (29 aa)
MPPKAHAMPRMPTPPHASVPATFGSVWCL*

>peptide 9 (28 aa)
MAWSWLSLAAAGLAGRVQRLACKKWMRVV

Sequence

>CNT30520391
GAAATTTTTCACAATTCACAGAGGGTCAGCAAAACATAGCTGAAAATAAAAACAAGCAAAGGCAATCAGATTAGAATTACAGGCAATCAGATTAGAATTA
CTCGTGCATGCGTCCAAATTCTCGTCACATCATCATGGCCTAACATTTTCCAAACTAAAACAAGATGACAGGCTACTTCTAAAGCAAGTGGCCAAGCATT
TCTCCAAGCAAGTCTGTCAGCGTCAGGAACGATTAGTGGCTAAGAAAAGGAGACCCTCTCGTCATGCATGCCCCTTTCTCTAGGGAAGGAACTGGAACAC
CAAACTTCGTTAGTGGCCTCTGGCTTTTAGCGCGCGACTTCACCTCGGCCGATGAACCACCACCAGGGTCCTCACCACGGCATATTTTGACGGGATGGGT
CGCGCGAAGGCAGGCCATGGACAGACATCACGTTCCGTCACCTCGCCGCCTCACGCGAAAGGGATGCCCACTACCACTAGGCTACCCCGATTTCACCTAG
CCACACGCTACACGTTTGCGCCTAGCGTTGCTTTGGACCAGCGGTGAATACGAATTCTTCAAATTCACTCCGTGTGTGGTTACGTTTCAGTACGTACCAT
ACGGTGGTCCGTGGAACCGTAGTACACGTTGGAGGATTTCAAGAACCAACGGTACGGTGCTAATAATTCATCATGGAGGGGTGAGACGCTAGAGTCTAGA
GAGGAGGCTCACATGGCATGGGACACAATCACACAAGGGAGGGAGGGGAGGGGGAGGACGTGGCCGAGCGTGCGTGCCCTCATCACACGACAAGGACGAC
TGGACCCGACGGACCATGTGCTACAGTGGAGCCGCGGGCCGGACCAGGCCCAGCTCAGCTTTTTACGCGCGCCGGTGGGCCCGCGTGTGTACCACCACCA
CCGGATGTTACTGTGCCGTCATGCACGGTGGGAGAGCCAGCCAGGTTGACGGGAGCAGTAAAAATCTGGAGGACGTAAAATTGCAGAGATTTCTACAGTA
GTACTCCGTAGTAAAATTTCAAGTCTAGAGATAAGGTTGGAGCTGATTAGCCCCGGGTCTCTCTATCTGTATTTATTTACTTTACTGTTAGGTCCGGGGA
GTCATGGCTAGCTGGGCTATTGAGGCCTGTGAGGGTGACCCGGTTGCGCTCTGCCGCATGCTCCTGTGGATGTTCTTGAATGTTCCAGCAAGTGTGTGTT
AATAACGGTCATTATCAAGACTACGGAAGGCTTAATGACAGTTCTCCGTGTGTAGTGTACTAACCCCTTGAAAATTAAGTTGTGATATTTAGAATATTTG
GAGCTTAGGCATCCACACATCTCTTTCAACGGTCAATTATTTCTTTCTTTTGGACAATGGTTTAGCTGAATTTCAAGCTTTTGTTCCTCTATCTAACAAT
AAGCAGCCTCGATGAATAACTTGTGTAACTAGGTACAGACTACTCTAAAAAAGACTAGGTGCAGACAAAATGAATCGTAAGTGAACCTTTACCTTTCTAT
CCCCAGCAAAAAAACGTTCTATGGGCCGGGAAAGAAATCCCTTCTGCCTGGACGCCTTTGAAAGAGCCAAACTGGATATTCTCTTGCTTTTATATTGTTA
TTATTTTCCTTCTTCACCGGAACAAAGGAATTTCTTTTTGTTCGCATGTGCCCAAACAGTATAGATGGGCAAGATTAGAGCATGCTAGCATCGCTTGAGC
TCTAATTAAGCTAAGTTCGCACAGACATGAAGTAAAAGAAGCTAATAAGCGAGCAAGCTAGCAGATCGAGAGAGAGAAATAAATAAAAGAAGAAAAAAGC
AGGAGGCCGTGGCGTTGGTCGGGTGCTCACCGGAACGTGGGAGTCGCGGGCGTTGCGCTTGGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAG
GTGCCGATGATCTCGGCGCCGAGGCCGGTGCCGCGGGAGTATCCGGAGGCGAGGGAGTTGGCGCCGCCGCCGTACCTGTCGAAGTAGGCGCTCTGGAACG
CCTTGACGAGGCCGAAGGTGACGGCTGGGTTGATGTGCCCCCCCGAGATGCCGGCGGTGCAGTAGACGAGGACGAAGATCATGCCGCCGAAGGCCCACGC
GATGCCGAGGATGCCCACGCCGCCGCACGCGTCGGTGCCGGCCACGTTCGGGTCCGTCTGGTGCTTGTAACCGATGACGGTGAGCACGGTGATGTAGAGG
AAGAGCAGCGTGGCGATGAACTCGGCGATGACGGCGCGGTACAGCGACCAGGAACCCAGCTCTGCCGCGTCGATCAGCGGCGCCGGGGGAGGGTCCGTGT
AGTCCTTGGCGGCGAACTCGCCGCCGCCGGCGCCGCTCTCGATCACGTCGTCCTTGCCCATGGCTTGGTCTTGGCTTAGCTTGGCAGCTGCGGGACTAGC
CGGCCGGGTGCAGAGGTTGGCTTGCAAGAAATGGATGAGAGTGGTGGG