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Detailed information on CNT30520352


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 7e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672010Setaria italicaSetaria viridis73.5899.3296.75585forward

Expression of CNT30520352

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVVWSGAPRVASMAQRPWMSSHSRKRWRPKTSL*

>peptide 2 (40 aa)
MRPFCGAGSARRVPRNVLAAAATDEAMAAAPPPPPGCAESV

>peptide 3 (34 aa)
MMPPASFLARFWSSESSSNCRYSTGFPSPNGSNP*

>peptide 4 (47 aa)
TSECINSSLVHILQITSPHQQALLINETSINKLSDRSSHHTLSLITK*

Sequence

>CNT30520352
TACAAGTGAATGCATTAATTCATCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAACTA
TCGGATCGATCTTCCCACCATACCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTTAA
TTAATTCAAGAACACGTTTCGATCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGGCGCCG
AGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAACGCTGGAGGCCGAAGACCTCGCTGTAGGGCTGGAACGGGGTGGACTTGA
CGTCGGAGGACTCGAAGCGGGTGCCGATGATGCCGCCGGCCTCGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTCGAACTGCAGGTACTCCACGGG
CTTCCCGAGCCCGAACGGGTCGAACCCGTAGTCGCCCACCAGTGACCCGTCGAGGTAGTCGGGCGCCACCGCGCCGGGGAACCAGAGCGGCCGGTCGGAG
ACCGACGACGTCTTGGCCGCCTTCTTCGGGGCGGCGGTCTTCTTGCCGCCGCCGAACCCGAACCGGGCCACGATGCGCCCGTTCTGCGGCGCTGGGTCCG
CCAGGCGGGTGCCCAGGAATGTGCTCGCCGCGGCGGCCACCGACGAAGCCATGGCTGCTGCTCCTCCTCCTCCTCCTGGGTGTGCTGAGAGCGTC