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Detailed information on CNT30520324


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672185Setaria italicaSetaria viridis36.7244.24100242forward
CNT30450016Setaria italicaSaccharum spontaneum35.3621.0993.99233forward
CNT30680544Setaria italicaTriticum urartu30.6578.2986.14202forward
CNT30496542Setaria italicaDigitaria exilis72.3842.9386.37477forward

Expression of CNT30520324

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MTRRAAPLTPTCCAGLSACLCCWARGEGAPTTALGDPRLTALSTSRSYAAGLAAWWWWSGA*

>peptide 2 (59 aa)
PELNTRNYKERRSPADALVDSLLSLFSCIHRNRLLSLKLHWTAAAAAIVGRRHETKKGL*

>peptide 3 (28 aa)
MKSGAFGFSDDDAMAMVLILGSPFYYLEQ

Sequence

>CNT30520324
CCTGAACTGAACACGAGAAACTACAAGGAGAGGAGATCACCAGCAGACGCCTTGGTTGATTCTCTCCTCTCTCTTTTTAGTTGTATACACAGAAACAGAC
TACTAAGCTTGAAGTTACACTGGACAGCAGCGGCAGCAGCCATCGTCGGTCGTCGCCATGAGACGAAGAAAGGTCTCTAGCGAGGCTGGTGGATGACGCG
GCGCGCGGCGCCCCTGACGCCGACGTGCTGCGCGGGCTTGTCCGCGTGCCTCTGCTGCTGGGCGCGCGGCGAGGGCGCACCGACGACGGCCCTCGGGGAT
CCGAGGCTGACCGCTCTGAGCACGTCGAGGTCGTACGCGGCGGGCTTGGCTGCCTGGTGGTGGTGGTCGGGGGCGTAGAAGAGGTCGTCGGTGCCGACCA
TGTCGAGCAGGTCGACGGAGTCGTCGGGGAGGAGCGCGGCGACGGCGGCGTCGTAGGCTGCCTCGTGGAGCTGGTGCTGTCGGAACCAGTGGTCCCGGAA
CCAGGCGGTGGTCTTGACGAGCTCCCACCACTCGGGCGAGAAGTCCTCCACCTGGCGGTACGCCGCCGGGATGAAGAGCGGCGCGTTCGGGTTCAGCGAC
GACGACGCCATGGCCATGGTGCTCATCCTCGGTTCTCCTTTCTACTACCTGGAACAAGC