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Detailed information on CNT30520322


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 8e-75

BLAST vs NONCODE:
NONBRAT002959, E-value = 2e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640553Setaria italicaNymphaea colorata18.9726.4689.2213forward
CNT30708158Setaria italicaGlycine max24.0432.5784.07270forward
CNT30221568Setaria italicaHordeum vulgare31.6133.9189.3355forward
CNT30387274Setaria italicaTriticum turgidum11.0427.6897.58124forward
CNT30562752Setaria italicaActinidia chinensis26.7123.7283.33300forward
CNT30236263Setaria italicaBrassica oleracea13.9832.383.44157forward
CNT30229721Setaria italicaAnanas comosus32.8615.7288.08369forward
CNT30340460Setaria italicaEragrostis tef30.9940.9493.97348forward
CNT30478099Setaria italicaArabidopsis halleri13.1820.9381.76148forward
CNT30596509Setaria italicaOryza meridionalis22.0816.3294.35248forward
CNT30370789Setaria italicaOryza glumipatula27.5222.4693.2309forward
CNT30496270Setaria italicaDigitaria exilis20.8423.7194.44234forward
CNT3039307Setaria italicaMarchantia polymorpha6.1420.7885.5169forward

Expression of CNT30520322

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MKQFWCTYVYIHTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPKTSL*

>peptide 2 (34 aa)
MMPPASFLARFWSSESSSNCRYSTGFPSPNGSNP*

>peptide 3 (47 aa)
TSECINSSLVHILQITSPHQQALLINETSINKLSDRSSHHTLSLITK*

>peptide 4 (39 aa)
MRPFCGAGSARRVPRNVLAAAATDEAMAAAPPPPPGWAES

Sequence

>CNT30520322
GTACAAGTGAATGCATTAATTCATCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAACT
ATCGGATCGATCTTCCCACCATACCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTTA
ATTAATTCAAGAACACGTTTCGATCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCT
GAGGTGGGTGGCCCAGTTGTTGAGCGGGCCCTTGCCGGAGCCGCCCGGGTAGAGCCTCTTCTCCGGGTCGAGCTCGGCGTTGCGCTGGAACTCGATGTAG
CCGATCACGAGCACCTCGATCCAGATGAGTGTCGAGATGGAGAAGGGCAGCGGCTGCCCCAGGTAGGACGACCCGTCCACAAGCTCAACCTGCCAGCCAT
CAATAACGTTCAGGTTAGACGCTTGCATAAGGATGGAATGAAACAATTTTGGTGCACATATGTATATATACATACCTTGCCGGCGTCCTGCCAGGTGACG
CCGGTGAGCCACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAACGCTGGAGGCCGAAGACCT
CGCTGTAGGGCTGGAACGGGGTGGACTTGACGTCGGAGGACTCGAAGCGGGTGCCGATGATGCCGCCGGCCTCGTTCTTGGCCAGGTTCTGGTCCAGCGA
GTCCAGCTCGAACTGCAGGTACTCCACGGGCTTCCCGAGCCCGAACGGGTCGAACCCGTAGTCGCCCACCAGTGACCCGTCGAGGTAGTCGGGCGCCACC
GCGCCGGGGAACCAGAGCGGCCGGTCGGAGACCGACGACGTCTTGGCCGCCTTCTTCGGGGCGGCGGTCTTCTTGCCGCCGCCGAACCCGAACCGGGCCA
CGATGCGCCCGTTCTGCGGCGCTGGGTCCGCCAGGCGGGTGCCCAGGAATGTGCTCGCCGCGGCGGCCACCGACGAAGCCATGGCTGCTGCTCCTCCTCC
TCCTCCTGGGTGGGCTGAGAGCG