CANTATAdb - search

Detailed information on CNT30520284

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672312	Setaria italica	Setaria viridis	54.72	94.36	97.93	435	forward
CNT30526451	Setaria italica	Phaseolus vulgaris	20.38	15.28	93.83	162	forward
CNT30436840	Setaria italica	Aegilops tauschii	23.27	45.68	90.27	185	forward
CNT30454075	Setaria italica	Saccharum spontaneum	56.73	49.4	86.47	451	forward
CNT30556512	Setaria italica	Panicum hallii	25.28	41.44	96.02	201	forward

Expression of CNT30520284

Peptides detected in this lncRNA

>peptide 1 (40 aa)
SLVHILQITSPHQQALLINETSINKLSDRSSHHTLSLITK*

>peptide 2 (29 aa)
MCSPRRPPTKPWLLLLLLLLGVLRASGGGG

>peptide 3 (56 aa)
MKQFWCTYVYIHTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPKTSL*

Sequence

>CNT30520284
TCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAACTATCGGATCGATCTTCCCACCATA
CCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTTAATTAATTCAAGAACACGTTTCGA
TCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGGCCGCCCGGGTAGAGCC
TCTTCTCCGGGTCGAGCTCGGCGTTGCGCTGGAACTCGATGTAGCCGATCACGAGCACCTCGATCCAGATGAGTGTCGAGATGGAGAAGGGCAGCGGCTG
CCCCAGGTAGGACGACCCGTCCACAAGCTCAACCTGCCAGCCATCAATAACGTTCAGGTTAGACGCTTGCATAAGGATGGAATGAAACAATTTTGGTGCA
CATATGTATATATACATACCTTGCCGGCGTCCTGCCAGGTGACGCCGGTGAGCCACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCC
GTGGATGAGCTCGCACTCGCGGAAACGCTGGAGGCCGAAGACCTCGCTGTAGGGCTGGAACGGGGTGGACTTGACGTCGGAGGACTCGAAGCGGGTGCCC
AGGAATGTGCTCGCCGCGGCGGCCACCGACGAAGCCATGGCTGCTGCTCCTCCTCCTCCTCCTGGGTGTGCTGAGAGCGTCAGGTGGTGGTGGTG