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Detailed information on CNT30520246


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 2e-99

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672063Setaria italicaSetaria viridis36.1765.8996.47340forward
CNT30221546Setaria italicaHordeum vulgare22.6693.4292.49213forward
CNT30251924Setaria italicaAvena sativa29.3650.7488.77276forward
CNT30450022Setaria italicaSaccharum spontaneum37.0233.6689.66348forward
CNT30681546Setaria italicaTriticum urartu22.0294.5294.2207forward
CNT30341745Setaria italicaEragrostis tef19.3636.4789.01182forward
CNT30361377Setaria italicaSorghum bicolor38.6232.2487.33363forward
CNT30596646Setaria italicaOryza meridionalis23.1929.5889.91218forward
CNT30148227Setaria italicaBrachypodium distachyon16.8162.791.77158forward
CNT30102506Setaria italicaOryza rufipogon21.3831.2191.04201forward
CNT30576982Setaria italicaOryza barthii23.432.6990.45220forward
CNT30496422Setaria italicaDigitaria exilis22.7734.6889.25214forward
CNT30556802Setaria italicaPanicum hallii54.2657.6993.33510forward

Expression of CNT30520246

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MQMHIHSVEQRRRDDTELWRRKSKESQKDRTTMQDQIEAHRRDRTLVTL*

>peptide 2 (45 aa)
MAWMYTYTRGGSSSAGCRPWPTPRARSRCRRGRRRGPCRRGRRRS*

>peptide 3 (58 aa)
MRFSKDVRQGINGMDVHLHQGRIFQRWLSPLAHSQSTISVPSWTPPWALSPWKASKLR*

>peptide 4 (53 aa)
MASPVTLLTRAKAGMPSSSLTLVLKRMSLYQCWWSSLGLAGASTTAPSRTARQ*

>peptide 5 (32 aa)
MIQSCGAGNRKKARRIAPQCRIRSRLTEGTGH*

Sequence

>CNT30520246
TGAAACAGAATGCAGATGCATATTCATTCAGTAGAACAAAGGAGACGAGATGATACAGAGTTGTGGCGCCGGAAATCGAAAGAAAGCCAGAAGGATCGCA
CCACAATGCAGGATCAGATCGAGGCTCACAGAAGGGACAGGACACTAGTCACACTGTGACCGACAGTCTGACGCAAATACAACTCCGAAATCCGCGATTA
CAACATAACACTCGGTTTATTCAATCGCTGCAGTAATCGGTTATTATTAGGTAGCAGCTACTTGGTTCCAGTCCATCAGGTTCCGCCGTCTCCATCGATC
TCTGCGAACGCAAGCAACCATTGATTGGAAAACATGAGATTTTCAAAGGATGTAAGGCAGGGCATCAATGGCATGGATGTACACTTACACCAGGGGAGGA
TCTTCCAGCGCTGGTTGTCGCCCTTGGCCCACTCCCAGAGCACGATCTCGGTGCCGTCGTGGACGCCGCCGTGGGCCTTGTCGCCGTGGAAGGCGTCGAA
GTTGAGGTAGATGTTGTTCACCATGCGGACGCAGCGGAAGCCGTCGCCGACGTCGCGGCTCTCGGTCCAGAGCACCGACTCGTCCTTGTAGTCCGGGTTG
TAGGGGACCAGCTTGACGGAGTGGCCCTGCCCCGTGGAGTGCTTGATGGCCTCGCCGGTGACCTTGTTGACGAGGGCGAAGGCCGGCATGCCTTCCTCGT
CCTTGACCCTGGTGCTGAAGCGCATGTCCTTGTACCAGTGCTGGTGGTCATCCTTGGGGTTGGCGGGGGCGAGCACGACGGCGCCGTCGCGGACGGCGAG
GCAGTAATTCTCGTTGGCGCGGCAGAAGATCTTGAACACCTGGTTGGGGCCCGACGCCGGGGGAGCCGGCTGGTTGTGGTGGTGGTGCCCGAACCACGAC
ATCTTCGGTTGGCAGGTGTGGAGTGTGAGCTGTGGTGAAT