Detailed information on CNT30520223


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 4e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30581232Setaria italicaEchinochloa crusgalli45.6552.3193.3373forward
CNT30556732Setaria italicaPanicum hallii45.948.0893.33375forward

Expression of CNT30520223

Peptides detected in this lncRNA

>peptide 1 (39 aa)
LVHILQITSPHQQALLINETSINKLSDRSSHHTLSLITK*

>peptide 2 (49 aa)
MCSPRRPPTKPWLLLLLLLLGVLRASGGGGVWRGEGSSRGTNKKEFRCYL

>peptide 3 (57 aa)
MRPFCGAGSARRVPRNVLAAAATDEAMAAAPPPPPGCAESVRWWWCVAWRGLVPGYK*

>peptide 4 (33 aa)
MVVWSGSLRVASMAQRPWMSSHSRKRWRPKTSL*

>peptide 5 (34 aa)
MMPPASFLARFWSSESSSNCRYSTGFPSPNGSNP*

Sequence

>CNT30520223
CTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAACTATCGGATCGATCTTCCCACCATACCC
TCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTTAATTAATTCAAGAACACGTTTCGATCG
ATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGGTGGCGAGCATGGCCCAGCGGC
CGTGGATGAGCTCGCACTCGCGGAAACGCTGGAGGCCGAAGACCTCGCTGTAGGGCTGGAACGGGGTGGACTTGACGTCGGAGGACTCGAAGCGGGTGCC
GATGATGCCGCCGGCCTCGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTCGAACTGCAGGTACTCCACGGGCTTCCCGAGCCCGAACGGGTCGAAC
CCGTAGTCGGGCGCCACCGCGCCGGGGAACCAGAGCGGCCGGTCGGAGACCGACGACGTCTTGGCCGCCTTCTTCGGGGCGGCGGTCTTCTTGCCGCCGC
CGAACCCGAACCGGGCCACGATGCGCCCGTTCTGCGGCGCTGGGTCCGCCAGGCGGGTGCCCAGGAATGTGCTCGCCGCGGCGGCCACCGACGAAGCCAT
GGCTGCTGCTCCTCCTCCTCCTCCTGGGTGTGCTGAGAGCGTCAGGTGGTGGTGGTGTGTGGCGTGGAGAGGGCTCGTCCCGGGGTACAAATAAGAAAGA
GTTCCGGTGCTATCTCC