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Detailed information on CNT30520175

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691572	Setaria italica	Oryza sativa	20.45	77.49	82.35	272	forward
CNT30225013	Setaria italica	Hordeum vulgare	5.34	25.72	94.37	71	forward
CNT30393896	Setaria italica	Triticum turgidum	7.22	36.64	95.83	96	forward
CNT30563527	Setaria italica	Actinidia chinensis	4.66	20.33	90.32	62	forward
CNT30588925	Setaria italica	Musa acuminata	4.66	25.94	90.32	62	forward
CNT30552831	Setaria italica	Oryza glaberrima	11.8	29.96	86.62	157	forward
CNT30250800	Setaria italica	Avena sativa	6.77	26.16	93.33	90	forward
CNT30461926	Setaria italica	Saccharum spontaneum	18.35	50.52	89.34	244	forward
CNT30364951	Setaria italica	Sorghum bicolor	38.05	19.05	85.77	506	forward
CNT30575240	Setaria italica	Oryza barthii	6.62	29.93	94.32	88	forward
CNT30498199	Setaria italica	Digitaria exilis	8.65	20.21	85.22	115	forward
CNT30115947	Setaria italica	Oryza nivara	11.8	30.72	85.99	157	forward
CNT30603768	Setaria italica	Oryza punctata	10	54.73	84.21	133	forward

Expression of CNT30520175

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVAVDELLLGEHLQLAGGEVVRPLQRSRRAERPARPARTLDINPTKIQQIA*

>peptide 2 (42 aa)
MCAAAQSDRNKNRKRTLHQLTKHGLKAGSKLWTNHKKKEERQ*

Sequence

>CNT30520175
ACATGGTTTCCCAAGCTCATCAGTCTTCTGAGCTCACTCGAGATGACCAAAAGGATTTAGTATCCAGGTATCTAATCTGAGCAGTCACTCTAGGCAATCT
GTATTGATCCATAGAGACTCAAGAACACATAGACAAAATGCTACCCGCTCCAAGGTCAAGCCCACCTGACGATCAGTAAACACATACACTCTACCTAACA
TTTTGTATCTTCTTATTATCCACCAACTCAACTAAGCCAACAACTTTGGCTCTCTAAACTATCTTTGACAACTACCCAAAACACTTTCAGTTCAACTCTA
AAGGAGTGACATCTCAATCTCGCACCACTCTTTTATCAGCAAATTTCACGTTTATATTTTCTCATCAACTAAGTTGTCCTCCCAAGTCCCCCCTTTCCCC
CGCTCCAAGATATGTGTGCCGCTGCCCAATCAGATAGGAATAAAAACAGGAAAAGGACACTACACCAGCTGACAAAACATGGGCTAAAGGCCGGAAGCAA
ACTATGGACGAATCACAAAAAAAAAGAAGAGAGACAATAATAGTAGGAAAATTGTGAAATTACGTAAGGGAAGAAGGAAAAGGTAGCCTGCGTCCTCACC
TCATGGTCGCAGTCGACGAATTGCTGCTCGGAGAGCACCTCCAGCTTGCCGGTGGCGAGGTAGTGCGCCCCCTCCAGCGCTCCCGACGCGCTGAACGACC
AGCACGACCCGCACGAACCCTAGACATCAACCCAACAAAAATTCAACAAATCGCGTAGACGCGAAGGGCAAGTCGAAATCGATCGAAAAAAAAATACGGC
TCCGATCGGCCCCAACGGATTCGGGGGGGAAACCGACCTGGTTCTTGACGGGGCCGACGGCGCCGTGGTCCCTCCAGTCGAAGTCCTCGGGAAGGCCGTC
AGTGGGGAGCACGGGCGCCTCGTGCGCCGAGTCCCCGAGCTCCCTGAGGAGCGCGCGCCGGGACTTGCGGAGGCCGAGGTAGGTCCGGCGGAACTCGGCC
GGGGTGAGGTCGGAGAACTTGGTGATGCCGTGCTCCGCCGACGGGTCCAGCAGCTGGTTGGCCTTGAACACGGACAGCCGGTACGCGTGCTCGTCGGCGT
CCTTGTAGGACTTGCCAAACCGCTGCACGAAGTTCAGGAAGTGGGACTCCGCGTTCAGCTCCAGGTCGTTGTCGTCGCCGCCGGGCACCACCTGACGGAT
CAGGGGGTCCTCGGCGTCGACAGCGGCGGCGACGACCGCGGCCGCCGCCGCGAGGGAGAGGACGAGGAGGAGGACGCGATGAGCCATTGGGGATTCCTTT
CTCGTTTGGATTGGTTGCTTCGGGTTTCTT