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Detailed information on CNT30520174


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FN42|CLPP2_ARATH, E-value = 5e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30190828Setaria italicaSecale cereale33.6429.6391.67360forward
CNT30301287Setaria italicaTriticum aestivum32.836.9591.17351forward
CNT30666871Setaria italicaTriticum dicoccoides34.3934.6291.3368forward
CNT30139438Setaria italicaLolium perenne55.4248.6589.04593forward
CNT309286Setaria italicaZea mays23.9346.2994.92256forward
CNT30686790Setaria italicaTriticum urartu23.1845.4289.11248forward
CNT30720370Setaria italicaTriticum spelta55.1450.2188.98590forward
CNT30100439Setaria italicaOryza rufipogon34.5844.6989.73370forward

Expression of CNT30520174

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSEAGRFSMTSSMRPQSRASSGSMNRSLSMHCSILSMGWRVCFW*

>peptide 2 (60 aa)
MAMSVACPCAPPEGWWIMTLALGRARLSPGAPAARRSEPMEAAWPMQSVVTGQRMYCMVS*

Sequence

>CNT30520174
GGCGGCGGGGGTGCCGGACGCCTCGGCAACCAGAACAACAAGGTTAACCTTGTCTAGTAAGAATTAAACCTTTGGATCTAACGACAAACACAGCCACCGG
ACGCGATAGGATTTCACCTTTGTGGCCACCGTTCCTCACACCGCAGAGGGCTCCTCAACATCCCTTCCCCGTCCGCCGCCGCCGCCGCCGCCGAGGTTGG
GCACATCGAGGCCGCCTCCACCGAGTCCTTCGGTCATGAGCGAGGCGGGCCGGTTCTCGATGACCTCGTCGATGAGGCCCCAGTCGCGCGCCTCCTCGGG
GTCCATGAACAGGTCCCTCTCCATGCACTGCTCGATCTTATCGATGGGCTGGCGCGTGTGCTTCTGGTAGATCTTGTTGAGCCGGTCGCGCATCTTGAGG
ATCTCCTTGGCCTGGATGGCGATGTCGGTGGCCTGCCCTTGCGCGCCACCAGAGGGCTGGTGGATCATGACCCTGGCGTTGGGCAGGGCGCGCCTCTCAC
CGGGCGCCCCGGCCGCGAGGAGGAGCGAGCCCATGGAGGCGGCCTGGCCGATGCAGAGCGTGGTGACGGGGCAGCGGATGTACTGCATGGTGTCGTAGAT
GGCGAGCCCGGCGGTGACGACGCCCCCCGGTGAGTTGATGTAGAGGTGGACGGGCTTGAGCGGGTTCTCGGACTCGAGGAAGAGGAGCTGCGCGACGACG
AGCGAGGCGGTGTCGTCGGCGATTGGGCCGTGGATGCAGACGATGCGCTCCTTGAGGAGGCGCGAGAAGATGTCGTAGGCGCGCTCCCCGCGGGAGGTGG
TCTCGATGACCATGGGGACGAGGCCGTACTCGCGGTGCGGCGAGAACCCCTCCGGCTGGGGCGGCTGGTAGGGCGACGAGGAGAAGAACGCCCGCGGGGG
CGCCGCCACGACGAGCCGGCGCGGCTCAGCGAGCCGGGCCGGGGCGAGGGCCGCGGCGAGGAGGCCGGGAGCGGGGAGGCCGCGGCGAGGTGGGCGAGGG
CGAGGGCGGAGGAGGGCGTCATGGCGGCGGCCGCGTCGCGCTCGGGCAGGGGGCGGGGGATCTGAGGCGG